Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g006030.2.1 | |
| Solyc01g006040.2.1 | |
| Solyc11g013370.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G14400.1 | Solyc01g006030.2.1 | AT1G55250.1 | 18849490 |
| AT1G14400.1 | Solyc01g006040.2.1 | AT1G55250.1 | 18849490 |
| AT1G14400.1 | Solyc11g013370.1.1 | AT2G44950.1 | 18849490 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017857 | Potato | mitochondrion, nucleus | 97.37 | 97.37 |
| Solyc02g087750.2.1 | Tomato | mitochondrion, nucleus | 94.74 | 94.74 |
| Solyc06g070980.2.1 | Tomato | mitochondrion, nucleus | 93.42 | 93.42 |
| Solyc03g113100.2.1 | Tomato | mitochondrion, nucleus | 92.11 | 92.11 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 91.45 | 91.45 |
| Bra026582.1-P | Field mustard | mitochondrion, nucleus | 91.45 | 91.45 |
| Bra024808.1-P | Field mustard | mitochondrion, nucleus | 91.45 | 91.45 |
| Bra026222.1-P | Field mustard | mitochondrion, nucleus | 91.45 | 91.45 |
| Bra017410.1-P | Field mustard | mitochondrion, nucleus | 90.79 | 90.79 |
| Bra026833.1-P | Field mustard | mitochondrion, nucleus | 90.13 | 90.13 |
| TraesCS3B01G131500.2 | Wheat | nucleus | 90.13 | 90.13 |
| CDY39315 | Canola | mitochondrion | 90.13 | 90.13 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 90.13 | 90.13 |
| TraesCS3D01G114600.3 | Wheat | mitochondrion | 90.13 | 84.57 |
| TraesCS3A01G112600.1 | Wheat | mitochondrion | 90.13 | 84.57 |
| Bra016704.1-P | Field mustard | nucleus | 81.58 | 81.58 |
| CDX84034 | Canola | nucleus | 55.92 | 79.44 |
| KRG99148 | Soybean | mitochondrion | 68.42 | 79.39 |
| Bra016703.1-P | Field mustard | nucleus | 90.13 | 65.24 |
| CDX96859 | Canola | mitochondrion | 80.26 | 64.55 |
| HORVU3Hr1G020470.1 | Barley | plastid | 90.13 | 60.35 |
| Solyc08g081950.2.1 | Tomato | cytosol | 35.53 | 45.38 |
| Solyc05g050230.2.1 | Tomato | cytosol | 42.76 | 43.92 |
| Solyc07g066080.2.1 | Tomato | cytosol | 42.76 | 43.92 |
| Solyc02g083570.2.1 | Tomato | cytosol | 42.11 | 43.24 |
| Solyc03g007470.2.1 | Tomato | cytosol | 42.11 | 43.24 |
| Solyc12g056100.1.1 | Tomato | cytosol | 42.11 | 43.24 |
| Solyc10g011740.2.1 | Tomato | cytosol | 42.11 | 43.24 |
| Solyc08g008220.2.1 | Tomato | cytosol | 42.11 | 43.24 |
| Solyc06g082600.2.1 | Tomato | extracellular | 41.45 | 42.57 |
| Solyc06g007510.2.1 | Tomato | cytosol | 41.45 | 42.57 |
| Solyc01g095490.2.1 | Tomato | cytosol | 41.45 | 42.57 |
| Solyc03g033410.2.1 | Tomato | cytosol, mitochondrion | 40.13 | 41.22 |
| Solyc10g007260.2.1 | Tomato | plastid | 36.18 | 35.95 |
| Solyc07g062570.2.1 | Tomato | plastid | 36.18 | 35.95 |
| Solyc01g005840.2.1 | Tomato | plastid | 30.92 | 25.97 |
Protein Annotations
| MapMan:19.2.2.1.4 | Gene3D:3.10.110.10 | GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016574 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0043161 |
| GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | UniProt:K4B774 | EMBL:KY246897 | PFAM:PF00179 |
| ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43898 | PANTHER:PTHR43898:SF8 | SMART:SM00212 | SUPFAM:SSF54495 |
| EnsemblPlantsGene:Solyc02g067420.2 | EnsemblPlants:Solyc02g067420.2.1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00027691D4 |
Description
Ubiquitin-conjugating enzyme E2 3 [Source:Projected from Arabidopsis thaliana (AT5G62540) UniProtKB/Swiss-Prot;Acc:P42746]
Coordinates
chr2:-:37604942..37609306
Molecular Weight (calculated)
17293.4 Da
IEP (calculated)
5.744
GRAVY (calculated)
-0.575
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPAKKRLM RDFKRLQQDP PAGISGAPYD SNIMLWNAVI FGPDDTPWDG GTFKMTLQFS EDYPNKPPRV HFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLSDPNPNS PANSEAARLF SENKRDYNRK VREIVEQSWT AD
101: DVAAILTSIQ SLLSDPNPNS PANSEAARLF SENKRDYNRK VREIVEQSWT AD
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD
Arabidopsis Description
UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.