Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 98.68 | 98.68 |
| CDY39315 | Canola | mitochondrion | 96.71 | 96.71 |
| Solyc02g087750.2.1 | Tomato | mitochondrion, nucleus | 95.39 | 95.39 |
| TraesCS3B01G131500.2 | Wheat | nucleus | 92.11 | 92.11 |
| Solyc02g067420.2.1 | Tomato | nucleus | 90.13 | 90.13 |
| PGSC0003DMT400017857 | Potato | mitochondrion, nucleus | 88.82 | 88.82 |
| TraesCS3D01G114600.3 | Wheat | mitochondrion | 92.11 | 86.42 |
| TraesCS3A01G112600.1 | Wheat | mitochondrion | 92.11 | 86.42 |
| CDX84034 | Canola | nucleus | 60.53 | 85.98 |
| AT5G62540.1 | Thale cress | nucleus | 82.89 | 84.0 |
| KRG99148 | Soybean | mitochondrion | 71.05 | 82.44 |
| PGSC0003DMT400003320 | Potato | cytoskeleton, cytosol, nucleus | 95.39 | 72.5 |
| Bra016703.1-P | Field mustard | nucleus | 100.0 | 72.38 |
| CDX96859 | Canola | mitochondrion | 86.84 | 69.84 |
| HORVU3Hr1G020470.1 | Barley | plastid | 92.11 | 61.67 |
| AT3G08700.1 | Thale cress | cytosol | 44.08 | 44.97 |
| AT5G53300.1 | Thale cress | cytosol, nucleus, peroxisome | 42.76 | 43.92 |
| AT5G56150.1 | Thale cress | cytosol, nucleus, peroxisome | 42.11 | 43.24 |
| AT3G08690.1 | Thale cress | cytosol | 42.11 | 43.24 |
| AT2G16740.1 | Thale cress | cytosol | 40.79 | 41.89 |
| AT5G41700.4 | Thale cress | cytosol, mitochondrion, peroxisome | 40.79 | 41.61 |
| AT1G78870.2 | Thale cress | cytosol | 36.84 | 36.6 |
| AT4G27960.2 | Thale cress | endoplasmic reticulum, golgi | 42.76 | 36.52 |
| AT1G36340.2 | Thale cress | cytosol | 34.87 | 34.42 |
| AT1G16890.3 | Thale cress | cytosol | 36.18 | 33.95 |
| AT1G64230.5 | Thale cress | cytosol | 41.45 | 33.16 |
| AT3G13550.1 | Thale cress | mitochondrion | 34.21 | 28.57 |
Protein Annotations
| MapMan:19.2.2.1.4 | PDB:2AAK | Gene3D:3.10.110.10 | EntrezGene:814805 | EntrezGene:838002 | UniProt:A0A178WMI7 |
| ProteinID:AAA32897.1 | ProteinID:AAF43940.1 | ProteinID:AEE29158.1 | ProteinID:AEE29159.1 | EMBL:AF332451 | EMBL:AK226391 |
| ArrayExpress:AT1G14400 | EnsemblPlantsGene:AT1G14400 | RefSeq:AT1G14400 | TAIR:AT1G14400 | RefSeq:AT1G14400-TAIR-G | EnsemblPlants:AT1G14400.1 |
| TAIR:AT1G14400.1 | EMBL:AY070074 | EMBL:AY085783 | EMBL:AY091330 | EMBL:DQ027016 | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010228 | GO:GO:0016043 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 |
| GO:GO:0033523 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | EMBL:M62721 |
| RefSeq:NP_001325162.1 | RefSeq:NP_001325163.1 | RefSeq:NP_001325164.1 | RefSeq:NP_563951.1 | RefSeq:NP_565289.1 | RefSeq:NP_973825.1 |
| ProteinID:OAP10712.1 | ProteinID:OAP18713.1 | UniProt:P25865 | PFAM:PF00179 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0020148 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43898 |
| PANTHER:PTHR43898:SF5 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00000013FE | EMBL:Z27262 | : | : | : |
Description
UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
Coordinates
chr1:-:4926486..4928812
Molecular Weight (calculated)
17282.3 Da
IEP (calculated)
5.184
GRAVY (calculated)
-0.589
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.