Factsheet for AT5G41700.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007470.2.1	Tomato	cytosol	94.63	95.27
PGSC0003DMT400023419	Potato	cytosol	94.63	95.27
KRH64511	Soybean	cytosol	93.96	94.59
KRH53428	Soybean	cytosol	93.96	94.59
GSMUA_Achr10P...	Banana	cytosol	93.96	94.59
AT5G53300.1	Thale cress	cytosol, nucleus, peroxisome	93.96	94.59
KRH15985	Soybean	cytosol	93.29	93.92
KRH18135	Soybean	cytosol	93.29	93.29
GSMUA_Achr4P02490_001	Banana	cytosol	92.62	93.24
AT3G08690.1	Thale cress	cytosol	90.6	91.22
AT5G56150.1	Thale cress	cytosol, nucleus, peroxisome	85.91	86.49
AT2G16740.1	Thale cress	cytosol	85.23	85.81
Bra027749.1-P	Field mustard	nucleus	83.22	81.58
AT4G27960.2	Thale cress	endoplasmic reticulum, golgi	93.96	78.65
CDY08368	Canola	cytosol	83.22	77.99
AT3G08700.1	Thale cress	cytosol	76.51	76.51
AT1G64230.5	Thale cress	cytosol	94.63	74.21
CDY38184	Canola	cytosol	83.89	69.44
AT1G78870.2	Thale cress	cytosol	46.98	45.75
AT1G36340.2	Thale cress	cytosol	46.31	44.81
AT1G16890.3	Thale cress	cytosol	47.65	43.83
AT5G62540.1	Thale cress	nucleus	42.95	42.67
AT1G14400.1	Thale cress	mitochondrion, nucleus	41.61	40.79
AT2G02760.2	Thale cress	mitochondrion, nucleus	40.94	40.13
AT3G13550.1	Thale cress	mitochondrion	45.64	37.36

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EntrezGene:834173	ProteinID:AED94712.1	ArrayExpress:AT5G41700	EnsemblPlantsGene:AT5G41700
RefSeq:AT5G41700	TAIR:AT5G41700	RefSeq:AT5G41700-TAIR-G	EnsemblPlants:AT5G41700.4	TAIR:AT5G41700.4	Unigene:At.23971
InterPro:IPR000608	InterPro:IPR016135	RefSeq:NP_568595.2	PFAM:PF00179	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0009072	PO:PO:0009089	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF78	SMART:SM00212	SUPFAM:SSF54495	Symbol:UBC8	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0000196FF4	:	:	:	:

Description

UBC8ubiquitin conjugating enzyme 8 [Source:TAIR;Acc:AT5G41700]

Coordinates

chr5:+:16675842..16677509

Molecular Weight (calculated)

16707.2 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.234

Length

149 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CIFAGPVAED MFHWQATIMG PAESPYSGGV FLVTIHFPPD YPFKPPKVAF RTKVFHPNIN SNGSICLDIL KEQWSPALTI
101: SKVLLSICSL LTDPNPDDPL VPEIAHMYKT DRAKYEATAR NWTQKYAMG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.