Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66232 | Canola | mitochondrion, nucleus | 91.33 | 91.33 |
| Bra029252.1-P | Field mustard | mitochondrion, nucleus | 91.33 | 91.33 |
| CDY30726 | Canola | mitochondrion, nucleus | 91.33 | 91.33 |
| Solyc03g113100.2.1 | Tomato | mitochondrion, nucleus | 86.67 | 85.53 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 85.33 | 84.21 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 84.0 | 82.89 |
| Zm00001d007897_P002 | Maize | mitochondrion | 86.0 | 60.28 |
| AT5G53300.1 | Thale cress | cytosol, nucleus, peroxisome | 44.67 | 45.27 |
| AT5G56150.1 | Thale cress | cytosol, nucleus, peroxisome | 44.0 | 44.59 |
| AT2G16740.1 | Thale cress | cytosol | 42.67 | 43.24 |
| AT3G08690.1 | Thale cress | cytosol | 42.67 | 43.24 |
| AT5G41700.4 | Thale cress | cytosol, mitochondrion, peroxisome | 42.67 | 42.95 |
| AT3G08700.1 | Thale cress | cytosol | 41.33 | 41.61 |
| AT4G27960.2 | Thale cress | endoplasmic reticulum, golgi | 44.67 | 37.64 |
| AT1G78870.2 | Thale cress | cytosol | 37.33 | 36.6 |
| AT1G16890.3 | Thale cress | cytosol | 37.33 | 34.57 |
| AT1G64230.5 | Thale cress | cytosol | 43.33 | 34.21 |
| AT1G36340.2 | Thale cress | cytosol | 34.67 | 33.77 |
| AT3G13550.1 | Thale cress | mitochondrion | 33.33 | 27.47 |
Protein Annotations
| MapMan:19.2.2.1.4 | Gene3D:3.10.110.10 | EntrezGene:836374 | UniProt:A0A178ULQ4 | ProteinID:AAA32898.1 | ProteinID:AED97620.1 |
| ArrayExpress:AT5G62540 | EnsemblPlantsGene:AT5G62540 | RefSeq:AT5G62540 | TAIR:AT5G62540 | RefSeq:AT5G62540-TAIR-G | EnsemblPlants:AT5G62540.1 |
| TAIR:AT5G62540.1 | EMBL:AY039851 | EMBL:AY048267 | EMBL:AY085367 | EMBL:AY143805 | Unigene:At.332 |
| ProteinID:BAB11504.1 | EMBL:DQ027018 | GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016567 | GO:GO:0016574 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 |
| GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_568956.1 | ProteinID:OAO94758.1 |
| UniProt:P42746 | PFAM:PF00179 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43898 |
| PANTHER:PTHR43898:SF7 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC3 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0000000B97 | : | : | : | : |
Description
UBC3UBC3 [Source:UniProtKB/TrEMBL;Acc:A0A178ULQ4]
Coordinates
chr5:+:25103934..25105619
Molecular Weight (calculated)
17137.4 Da
IEP (calculated)
5.661
GRAVY (calculated)
-0.421
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTPAKKRLM WDFKRLQKDP PVGISGAPQD NNIMHWNALI FGPEDTPWDG GTFKLTLHFT EDYPNKPPIV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAVLTSIQ SLLCDPNPDS PANAEAARLF SENKREYNRK VIEIVEQSYV
101: DVAAVLTSIQ SLLCDPNPDS PANAEAARLF SENKREYNRK VIEIVEQSYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.