Factsheet for Zm00001d007897_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54510	Soybean	cytosol, nucleus, plastid	50.93	93.97
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	66.36	93.42
Zm00001d034404_P001	Maize	mitochondrion	67.29	88.89
Bra029252.1-P	Field mustard	mitochondrion, nucleus	61.68	88.0
CDY30726	Canola	mitochondrion, nucleus	61.68	88.0
CDY66232	Canola	mitochondrion, nucleus	61.68	88.0
AT5G62540.1	Thale cress	nucleus	60.28	86.0
Zm00001d013092_P002	Maize	mitochondrion	68.69	84.48
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	65.89	79.21
CDY68969	Canola	mitochondrion	47.66	70.34
Zm00001d018884_P002	Maize	mitochondrion	69.16	66.67
Zm00001d012513_P001	Maize	mitochondrion	28.97	41.89
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	28.97	41.89
Zm00001d001913_P001	Maize	cytosol	28.5	41.22
Zm00001d019981_P003	Maize	cytosol	28.04	40.54
Zm00001d053897_P001	Maize	mitochondrion	28.04	40.54
Zm00001d010618_P003	Maize	cytosol	29.44	38.65
Zm00001d009552_P002	Maize	cytosol	27.1	36.48
Zm00001d038995_P001	Maize	cytosol	27.57	36.2
Zm00001d011500_P014	Maize	cytosol	26.64	35.19
Zm00001d043905_P003	Maize	cytosol	27.1	34.32
Zm00001d005532_P003	Maize	cytosol, mitochondrion	28.04	32.79
Zm00001d037052_P001	Maize	cytosol	23.83	32.08
Zm00001d011565_P002	Maize	cytosol, mitochondrion	26.64	28.64
Zm00001d043998_P001	Maize	cytosol	28.97	26.38
Zm00001d021904_P001	Maize	plastid	21.96	25.54

Protein Annotations

EntrezGene:100280476	EntrezGene:100283297	EntrezGene:100283749	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	UniProt:A0A1D6F9M3
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135	ProteinID:ONM27838.1	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF2	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000843131A	EnsemblPlantsGene:Zm00001d007897	EnsemblPlants:Zm00001d007897_P002
EnsemblPlants:Zm00001d007897_T002	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 3

Coordinates

chr2:+:241927996..241932729

Molecular Weight (calculated)

24606.4 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.376

Length

214 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFRRLQQDP PAGISGAPHD NNIMLWNAVI FGRYPRNTWG TRYLVATGTK THLAPHDCFS MFRPFNLSCP YWGAFGSFSY RLKFVFGAYV
101: SAEHRVIITK LKGTFKLTLQ FTEDYPNKPP TVRFVSRMFH PNIYADGSIC LDILQNQWSP IYDVAAILTS IQSLLCDPNP NSPANSEAAR LFSENKREYN
201: RKVREIVEQS WTAD

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.