Factsheet for Zm00001d005532_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019981_P003	Maize	cytosol	79.23	97.97
Os09t0293400-01	Rice	cytosol	78.69	97.3
TraesCS5B01G174300.1	Wheat	cytosol	77.6	95.95
HORVU5Hr1G053810.1	Barley	cytosol	77.05	95.27
TraesCS5A01G177100.1	Wheat	cytosol	77.05	95.27
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	46.45	94.44
Zm00001d012513_P001	Maize	mitochondrion	72.68	89.86
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	72.68	89.86
Zm00001d001913_P001	Maize	cytosol	71.58	88.51
Zm00001d053897_P001	Maize	mitochondrion	67.21	83.11
Zm00001d010618_P003	Maize	cytosol	72.68	81.6
TraesCS5D01G181400.1	Wheat	cytosol, plastid	82.51	78.65
Zm00001d011500_P014	Maize	cytosol	58.47	66.05
Zm00001d037052_P001	Maize	cytosol	53.01	61.01
Zm00001d043998_P001	Maize	cytosol	68.85	53.62
Zm00001d009552_P002	Maize	cytosol	39.34	45.28
Zm00001d038995_P001	Maize	cytosol	39.89	44.79
Zm00001d043905_P003	Maize	cytosol	39.89	43.2
Zm00001d021904_P001	Maize	plastid	42.62	42.39
Zm00001d034404_P001	Maize	mitochondrion	32.79	37.04
Zm00001d011565_P002	Maize	cytosol, mitochondrion	39.34	36.18
Zm00001d013092_P002	Maize	mitochondrion	33.33	35.06
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	32.24	33.15
Zm00001d007897_P002	Maize	mitochondrion	32.79	28.04
Zm00001d018884_P002	Maize	mitochondrion	32.79	27.03

Protein Annotations

EntrezGene:100285413	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	UniProt:A0A1D6ENM7	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135
ProteinID:ONM21395.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF55
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00084528D6
EnsemblPlantsGene:Zm00001d005532	EnsemblPlants:Zm00001d005532_P003	EnsemblPlants:Zm00001d005532_T003	SEG:seg	:	:

Description

Ubiquitin-conjugating enzyme E2-17 kDa

Coordinates

chr2:+:177521251..177524929

Molecular Weight (calculated)

20938.0 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.475

Length

183 amino acids

Sequence
(BLAST)

001: MIPTNSFKPS RQQWLCYKVI SHHVHHCLRY SFFSDMANKR IQKELMDLQK DPPTSCSAGP AGEDLFHWQA TIMGPSDSPY AGGVFFVNIH FPPDYPFKPP
101: KVNFQTKVYH PNINSNGSIC LDILKEQWSP ALTISKVLLS ISSLLTDPNP DDPLVPEIAH MYKNQRPRYE ETARAWTQKY AMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.