Factsheet for Zm00001d036054_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31665	Sorghum	cytosol	97.75	97.75
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	82.58	96.71
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	81.46	95.39
TraesCS2A01G247700.1	Wheat	nucleus	81.46	95.39
Zm00001d034404_P001	Maize	mitochondrion	82.58	90.74
Zm00001d013092_P002	Maize	mitochondrion	83.15	85.06
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	83.15	76.29
Zm00001d007897_P002	Maize	mitochondrion	79.21	65.89
Zm00001d018884_P002	Maize	mitochondrion	81.46	65.32
Zm00001d012513_P001	Maize	mitochondrion	34.83	41.89
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	34.83	41.89
Zm00001d001913_P001	Maize	cytosol	34.83	41.89
Zm00001d053897_P001	Maize	mitochondrion	33.71	40.54
Zm00001d019981_P003	Maize	cytosol	33.15	39.86
Zm00001d010618_P003	Maize	cytosol	35.39	38.65
Zm00001d009552_P002	Maize	cytosol	32.58	36.48
Zm00001d038995_P001	Maize	cytosol	33.15	36.2
Zm00001d043905_P003	Maize	cytosol	32.58	34.32
Zm00001d011500_P014	Maize	cytosol	30.9	33.95
Zm00001d005532_P003	Maize	cytosol, mitochondrion	33.15	32.24
Zm00001d037052_P001	Maize	cytosol	28.09	31.45
Zm00001d011565_P002	Maize	cytosol, mitochondrion	32.02	28.64
Zm00001d043998_P001	Maize	cytosol	34.83	26.38
Zm00001d021904_P001	Maize	plastid	25.28	24.46

Protein Annotations

EntrezGene:100284762	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	UniProt:A0A1D6LKH6	ProteinID:AQK80210.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF8
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002209236
EnsemblPlantsGene:Zm00001d036054	EnsemblPlants:Zm00001d036054_P001	EnsemblPlants:Zm00001d036054_T001	:	:	:

Description

Ubiquitin-conjugating enzyme E2 2

Coordinates

chr6:-:69177791..69181604

Molecular Weight (calculated)

20130.9 Da

IEP (calculated)

5.230

GRAVY (calculated)

-0.418

Length

178 amino acids

Sequence
(BLAST)

001: MDAPIHQFCC GFVRSVVPVV ADEHPGMSTP ARKRLMRDFK RLMQDPPAGI SGAPQDNNIM LWNAVIFGPD DTPWDGGTFK LTLQFNEEYP NKPPTVRFVS
101: RMFHPNIYAD GSICLDILQN QWSPIYDVAA ILTSIQSLLC DPNPNSPANS EAARMFSENK REYNRKVREV VEQSWTAD

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.