Factsheet for Zm00001d018884_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45858	Soybean	mitochondrion, nucleus	67.12	98.03
TraesCS2A01G247700.1	Wheat	nucleus	66.67	97.37
CDY11654	Canola	mitochondrion	66.22	96.71
CDY38761	Canola	mitochondrion	66.22	96.71
Bra016264.1-P	Field mustard	mitochondrion	66.22	96.71
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	65.77	96.05
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	65.77	96.05
Zm00001d034404_P001	Maize	mitochondrion	66.22	90.74
Zm00001d013092_P002	Maize	mitochondrion	67.12	85.63
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	65.32	81.46
Zm00001d007897_P002	Maize	mitochondrion	66.67	69.16
Zm00001d001913_P001	Maize	cytosol	27.93	41.89
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	27.93	41.89
Zm00001d012513_P001	Maize	mitochondrion	27.93	41.89
Zm00001d053897_P001	Maize	mitochondrion	27.03	40.54
Zm00001d019981_P003	Maize	cytosol	27.03	40.54
Zm00001d010618_P003	Maize	cytosol	28.38	38.65
Zm00001d009552_P002	Maize	cytosol	25.68	35.85
Zm00001d038995_P001	Maize	cytosol	26.13	35.58
Zm00001d011500_P014	Maize	cytosol	25.68	35.19
Zm00001d043905_P003	Maize	cytosol	25.68	33.73
Zm00001d005532_P003	Maize	cytosol, mitochondrion	27.03	32.79
Zm00001d037052_P001	Maize	cytosol	22.97	32.08
Zm00001d011565_P002	Maize	cytosol, mitochondrion	25.23	28.14
Zm00001d043998_P001	Maize	cytosol	27.93	26.38
Zm00001d021904_P001	Maize	plastid	20.72	25.0

Protein Annotations

EntrezGene:100280476	EntrezGene:100283297	EntrezGene:100283749	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	UniProt:A0A1D6HT13
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740
InterPro:IPR000608	InterPro:IPR016135	ProteinID:ONM51548.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43898	PANTHER:PTHR43898:SF2	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000844B405	EnsemblPlantsGene:Zm00001d018884	EnsemblPlants:Zm00001d018884_P002	EnsemblPlants:Zm00001d018884_T002	:

Description

Ubiquitin-conjugating enzyme E2 2

Coordinates

chr7:-:8344609..8353437

Molecular Weight (calculated)

24486.9 Da

IEP (calculated)

6.909

GRAVY (calculated)

-0.388

Length

222 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFRRLQQDP PAGISGAPHD NNIMLWNAVI FGPDDTPWDG GSLIRNCAGG TVEIHGALRY LGATGTETRL FNGDRLTAIC RDWSGVDPLA
101: ISGAAAGRPT SSQGPLVGHP CTFKLTLQFT EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY DVAAILTSIQ SLLCDPNPNS PANSEAARLF
201: SENKREYNRK VREIVEQSWT AD

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.