Factsheet for Zm00001d001913_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13053	Sorghum	cytosol	100.0	100.0
Os04t0667800-01	Rice	cytosol	100.0	100.0
TraesCS2A01G539800.1	Wheat	cytosol	98.65	98.65
TraesCS2B01G570100.1	Wheat	cytosol	98.65	98.65
TraesCS2D01G541400.1	Wheat	cytosol	98.65	98.65
VIT_19s0015g01190.t01	Wine grape	cytosol	97.3	97.3
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	95.95	95.95
Zm00001d012513_P001	Maize	mitochondrion	95.95	95.95
GSMUA_Achr4P19400_001	Banana	cytosol	94.59	94.59
KRH45376	Soybean	cytosol	94.59	94.59
KRH07669	Soybean	cytosol, nucleus, peroxisome	89.86	89.86
Zm00001d019981_P003	Maize	cytosol	88.51	88.51
Zm00001d053897_P001	Maize	mitochondrion	87.84	87.84
Zm00001d010618_P003	Maize	cytosol	96.62	87.73
KRH07671	Soybean	cytosol	54.05	82.47
Zm00001d005532_P003	Maize	cytosol, mitochondrion	88.51	71.58
Zm00001d011500_P014	Maize	cytosol	75.68	69.14
Zm00001d037052_P001	Maize	cytosol	68.92	64.15
Zm00001d043998_P001	Maize	cytosol	91.22	57.45
Zm00001d009552_P002	Maize	cytosol	47.97	44.65
Zm00001d038995_P001	Maize	cytosol	48.65	44.17
Zm00001d043905_P003	Maize	cytosol	47.97	42.01
Zm00001d021904_P001	Maize	plastid	51.35	41.3
Zm00001d034404_P001	Maize	mitochondrion	42.57	38.89
Zm00001d013092_P002	Maize	mitochondrion	43.24	36.78
Zm00001d011565_P002	Maize	cytosol, mitochondrion	47.3	35.18
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	41.89	34.83
Zm00001d007897_P002	Maize	mitochondrion	41.22	28.5
Zm00001d018884_P002	Maize	mitochondrion	41.89	27.93

Protein Annotations

EntrezGene:100281830	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	UniProt:B6SZE0	EMBL:BT086907	EMBL:EU958105
EMBL:EU958574	EMBL:EU966254	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	ProteinID:ONM12402.1	ProteinID:ONM12405.1
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00001B15BE	EnsemblPlantsGene:Zm00001d001913
EnsemblPlants:Zm00001d001913_P001	EnsemblPlants:Zm00001d001913_T001	:	:	:	:

Description

ubiquitin conjugating enzyme4Ubiquitin-conjugating enzyme E2 11

Coordinates

chr2:+:2799861..2803017

Molecular Weight (calculated)

16507.9 Da

IEP (calculated)

8.073

GRAVY (calculated)

-0.314

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVGEDM FHWQATIMGP SDSPFAGGVF LVNIHFPPDY PFKPPKVSFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.