Factsheet for Zm00001d021904_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003685_P001
Zm00001d009288_P014
Zm00001d009745_P023
Zm00001d013116_P002
Zm00001d018207_P001
Zm00001d020989_P011
Zm00001d024743_P001
Zm00001d025407_P001
Zm00001d028143_P002
Zm00001d028517_P001
Zm00001d034361_P001
Zm00001d035130_P001
Zm00001d039165_P046
Zm00001d040485_P001
Zm00001d049652_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13550.1	Zm00001d018207_P001	AT2G32950.1	11877375
AT3G13550.1	Zm00001d052138_P004	AT2G32950.1	11877375
AT3G13550.1	Zm00001d018207_P001	AT2G32950.1	18552200
AT3G13550.1	Zm00001d052138_P004	AT2G32950.1	18552200
AT3G13550.1	Zm00001d009745_P023	AT4G05420.1	16844902
AT3G13550.1	Zm00001d039165_P046	AT4G05420.1	16844902
AT3G13550.1	Zm00001d009745_P023	AT4G05420.1	18552200
AT3G13550.1	Zm00001d039165_P046	AT4G05420.1	18552200
AT3G13550.1	Zm00001d009288_P014	AT4G10180.1	16844902
AT3G13550.1	Zm00001d020989_P011	AT4G10180.1	16844902
AT3G13550.1	Zm00001d024743_P001	AT4G10180.1	16844902
AT3G13550.1	Zm00001d040485_P001	AT4G10180.1	16844902
AT3G13550.1	Zm00001d009288_P014	AT4G10180.1	18552200
AT3G13550.1	Zm00001d020989_P011	AT4G10180.1	18552200
AT3G13550.1	Zm00001d024743_P001	AT4G10180.1	18552200
AT3G13550.1	Zm00001d040485_P001	AT4G10180.1	18552200
AT3G13550.1	Zm00001d003685_P001	AT4G14110.1	11877375
AT3G13550.1	Zm00001d025407_P001	AT4G14110.1	11877375
AT3G13550.1	Zm00001d028517_P001	AT5G14250.1	11877375
AT3G13550.1	Zm00001d035130_P001	AT5G14250.1	11877375
AT3G13550.1	Zm00001d049652_P001	AT5G14250.1	11877375
AT3G13550.1	Zm00001d028143_P002	AT5G42970.1	11877375
AT3G13550.1	Zm00001d013116_P002	AT5G46210.1	16844902
AT3G13550.1	Zm00001d034361_P001	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97436	Sorghum	plastid	94.57	93.05
TraesCS2A01G187000.1	Wheat	plastid	89.67	86.84
TraesCS2B01G220200.1	Wheat	plastid	90.22	86.46
Os07t0577400-01	Rice	nucleus	84.24	76.73
GSMUA_Achr4P22180_001	Banana	cytosol	57.61	76.26
VIT_06s0004g00730.t01	Wine grape	plastid	62.5	65.34
KRH42820	Soybean	plastid	57.61	60.23
Solyc01g005840.2.1	Tomato	plastid	58.15	59.12
AT3G13550.1	Thale cress	mitochondrion	57.07	57.69
Bra027422.1-P	Field mustard	plastid	54.35	54.64
CDY59253	Canola	mitochondrion	54.35	54.64
CDY23617	Canola	plastid	54.35	54.64
Zm00001d019981_P003	Maize	cytosol	42.39	52.7
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	41.85	52.03
Zm00001d012513_P001	Maize	mitochondrion	41.85	52.03
Zm00001d001913_P001	Maize	cytosol	41.3	51.35
Zm00001d053897_P001	Maize	mitochondrion	39.13	48.65
Zm00001d010618_P003	Maize	cytosol	41.85	47.24
Zm00001d005532_P003	Maize	cytosol, mitochondrion	42.39	42.62
Zm00001d011500_P014	Maize	cytosol	35.87	40.74
Zm00001d037052_P001	Maize	cytosol	34.24	39.62
Zm00001d009552_P002	Maize	cytosol	33.7	38.99
Zm00001d038995_P001	Maize	cytosol	34.24	38.65
Zm00001d043905_P003	Maize	cytosol	33.7	36.69
Zm00001d043998_P001	Maize	cytosol	42.39	33.19
Zm00001d011565_P002	Maize	cytosol, mitochondrion	33.15	30.65
Zm00001d034404_P001	Maize	mitochondrion	24.46	27.78
Zm00001d013092_P002	Maize	mitochondrion	25.0	26.44
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	24.46	25.28
Zm00001d007897_P002	Maize	mitochondrion	25.54	21.96
Zm00001d018884_P002	Maize	mitochondrion	25.0	20.72

Protein Annotations

EntrezGene:100280942	MapMan:19.2.2.8.3.3.1	Gene3D:3.10.110.10	UniProt:B6SPY0	EMBL:BT062517	EMBL:EU954795
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:0010099	InterPro:IPR000608	InterPro:IPR016135	ProteinID:ONM59035.1
ProteinID:ONM59036.1	PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF41	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000182B53D	EnsemblPlantsGene:Zm00001d021904	EnsemblPlants:Zm00001d021904_P001
EnsemblPlants:Zm00001d021904_T001	SEG:seg	:	:	:	:

Description

Constitutive photomorphogenesis protein 10

Coordinates

chr7:+:165726475..165732380

Molecular Weight (calculated)

19985.7 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.235

Length

184 amino acids

Sequence
(BLAST)

001: MSSSSSFPNS RFPFAAGAGA SGGSGSSVRP WGSSGGTSVS SSGKRIQKEL LDLNASDCSA GPKGDNLYHW LSTIIGPQGS PYEGGIFFLD IVFPPDYPFK
101: PPMVTFKTRI YHCNIDSTGK VHLDILKDGW SPAFTISKVL LAIKDIISNP DPYSPLMMSI SRQYLTDRAK HDEIAAEWTM RFAR

Best Arabidopsis Sequence Match ( AT3G13550.1 )
(BLAST)

001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK

Arabidopsis Description

COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.