Factsheet for Zm00001d040485_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	Zm00001d009745_P023	AT4G05420.1	16792691
AT4G10180.1	Zm00001d039165_P046	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024743_P001	Maize	cytosol	72.48	93.1
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	40.94	25.31
Zm00001d009288_P014	Maize	mitochondrion	71.81	20.86
EES13430	Sorghum	mitochondrion	67.11	19.57
Zm00001d020989_P011	Maize	plastid	69.13	19.14
HORVU3Hr1G044640.3	Barley	mitochondrion	61.07	18.88
Os01t0104600-01	Rice	mitochondrion	61.74	18.0
KRH15950	Soybean	cytosol	48.32	17.96
TraesCS3B01G231100.1	Wheat	mitochondrion	61.07	17.81
TraesCS3A01G194600.1	Wheat	mitochondrion	60.4	17.61
TraesCS4D01G180900.3	Wheat	mitochondrion	60.4	17.61
TraesCS4A01G125100.1	Wheat	plastid	59.73	15.75
CDY05087	Canola	plastid	52.35	14.55
CDX90747	Canola	mitochondrion, nucleus, plastid	51.68	14.34
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	51.68	14.34
VIT_15s0048g02140.t01	Wine grape	mitochondrion	51.01	14.31
Solyc01g056340.2.1	Tomato	mitochondrion	49.66	14.15
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	50.34	13.81
KRH27796	Soybean	mitochondrion	49.66	13.81
KRH77746	Soybean	mitochondrion	49.66	13.81
KRH18185	Soybean	nucleus	6.71	13.51
PGSC0003DMT400080769	Potato	cytosol	14.77	7.41

Protein Annotations

EnsemblPlants:Zm00001d040485_P001	EnsemblPlants:Zm00001d040485_T001	EnsemblPlantsGene:Zm00001d040485	InterPro:De-etiolated_protein_1_Det1	PFAM:PF09737	ProteinID:ONM31443.1
UniParc:UPI000844A817	UniProt:A0A1D6MR16	MapMan:19.2.2.8.3.3.2	:	:	:

Description

Light-mediated development protein DET1

Coordinates

chr3:+:46292685..46294325

Molecular Weight (calculated)

17507.9 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.189

Length

149 amino acids

Sequence
(BLAST)

001: MQTGYGGSFL PGIKQRLLSY IFCKTWNEVP DQTLRVQHLK KKFYFRFQDY VDLIIWKLKS SFNYLRAITV LLARSFSHKT FFSRGPYSMV VDEAQFLDRH
101: HLFVKFGSVD GGVSRSTNQN LAFFAVYNME TTDIVSLHQN SSEDIYAWY

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.