Factsheet for PGSC0003DMT400080769

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009595

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	PGSC0003DMT400009595	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07410_001	Banana	cytosol, mitochondrion	59.26	60.48
KRH15950	Soybean	cytosol	71.04	52.62
Solyc01g056340.2.1	Tomato	mitochondrion	89.9	51.05
VIT_15s0048g02140.t01	Wine grape	mitochondrion	76.77	42.94
KRH77746	Soybean	mitochondrion	72.39	40.11
HORVU3Hr1G044640.3	Barley	mitochondrion	64.98	40.04
KRH27796	Soybean	mitochondrion	72.05	39.93
Os01t0104600-01	Rice	mitochondrion	64.98	37.77
EES13430	Sorghum	mitochondrion	64.65	37.57
TraesCS3B01G231100.1	Wheat	mitochondrion	64.65	37.57
TraesCS3A01G194600.1	Wheat	mitochondrion	64.31	37.38
TraesCS4D01G180900.3	Wheat	mitochondrion	63.64	36.99
Zm00001d009288_P014	Maize	mitochondrion	62.63	36.26
CDY05087	Canola	plastid	64.98	36.01
CDX90747	Canola	mitochondrion, nucleus, plastid	64.31	35.57
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	63.97	35.38
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	64.31	35.17
Zm00001d020989_P011	Maize	plastid	62.96	34.76
TraesCS4A01G125100.1	Wheat	plastid	63.3	33.27
Zm00001d040485_P001	Maize	mitochondrion	7.41	14.77
KRH18185	Soybean	nucleus	1.35	5.41
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	3.7	4.56
Zm00001d024743_P001	Maize	cytosol	1.35	3.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400080769	EnsemblPlantsGene:PGSC0003DMG400031459	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:De-etiolated_protein_1_Det1	PANTHER:PTHR13374	PFAM:PF09737
PGSC:PGSC0003DMG400031459	UniParc:UPI0002952589	UniProt:M1D3Y3	MapMan:19.2.2.8.3.3.2	:	:

Description

Deetiolated 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400031459]

Coordinates

chr1:+:29501710..29508880

Molecular Weight (calculated)

34399.5 Da

IEP (calculated)

4.982

GRAVY (calculated)

-0.310

Length

297 amino acids

Sequence
(BLAST)

001: MVVHPLQIHR ARRFYENIVP SYTIYDVECP DHSFRKFTDD GLYLVSFSRN HQDLVVYRPT WLTFSCKEED CDTHDLPLKA RKFESFFTQL YSVSLASSGE
101: LICKDFFLYM ESNQFGLFAT STAQIHDAPP TGGAIQGVPS VEKITFHLLR LEDGAILDER VFHNDYVNLA HSIGAFLYDD LLAIVSLRYQ RIHILQIRDS
201: GDLVDVRAIG EFCREDDELF LNSNSQVLVN HVGNGFHHSL PESETSFLSG IKQRLLSFIF RGIWNEETDQ TMKFTDKERK SDEEIMRDCQ NEDGIRY

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.