CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	KXG22678	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G231100.1	Wheat	mitochondrion	91.59	91.59
Os01t0104600-01	Rice	mitochondrion	91.39	91.39
TraesCS3A01G194600.1	Wheat	mitochondrion	91.19	91.19
TraesCS4D01G180900.3	Wheat	mitochondrion	88.65	88.65
HORVU3Hr1G044640.3	Barley	mitochondrion	83.37	88.38
Zm00001d020989_P011	Maize	plastid	92.56	87.92
TraesCS4A01G125100.1	Wheat	plastid	88.45	80.0
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	36.2	76.76
Solyc01g056340.2.1	Tomato	mitochondrion	70.45	68.83
VIT_15s0048g02140.t01	Wine grape	mitochondrion	70.65	67.98
KRH77746	Soybean	mitochondrion	71.23	67.91
KRH27796	Soybean	mitochondrion	71.04	67.72
Zm00001d040485_P001	Maize	mitochondrion	19.57	67.11
KRH15950	Soybean	cytosol	51.86	66.08
PGSC0003DMT400080769	Potato	cytosol	37.57	64.65
CDY05087	Canola	plastid	65.95	62.87
CDX90747	Canola	mitochondrion, nucleus, plastid	65.75	62.57
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	65.75	62.57
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	65.75	61.88
KRH18185	Soybean	nucleus	8.61	59.46
Zm00001d024743_P001	Maize	cytosol	13.11	57.76

Protein Annotations

MapMan:19.2.2.8.3.3.2	InterPro:6-hairpin_glycosidase_sf	EntrezGene:8080887	UniProt:C5YHU1	InterPro:De-etiolated_protein_1_Det1	EnsemblPlants:EES13430
ProteinID:EES13430	ProteinID:EES13430.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	PFAM:PF09737	PANTHER:PTHR13374	EnsemblPlantsGene:SORBI_3007G058100
SUPFAM:SSF48208	UniParc:UPI0001A874C9	RefSeq:XP_002443935.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:5980191..5987650

Molecular Weight (calculated)

59233.1 Da

IEP (calculated)

7.479

GRAVY (calculated)

-0.290

Length

511 amino acids

Sequence
(BLAST)

001: MVRFFRSGNL ASRVFDRQLL SPRPGAAVNT IRQFYENLVP SYTIYDIDCP DYSFRKFTDD GQYLVAFSRN HQDLIVYRPI WLTYSCNEDC DSHDLPAKSK
101: KFDSFFKQLY SIPLASSNEY ICKDFFLYIE CNQFGLFATS TAQSNDSTAT EGAIHGVPSI EKITFYLVRL EDGVILDEKA FCNDFINLAH SIGAYLYEDL
201: LCIVSLRYQT VHILQIRDSG NLVEVRRIGA FCREDDELFL HSHAQTGYGG SFLPGIKQRL LSYIFRKTWN EVPDQTLRVQ HLKKKFYFHF QDYVDLIIWK
301: VQFLDRHHLF IKFGSVDGGV SRSTDQNLAF FAVYNMETTD IVSLYENSSE ELYSLFEQFY DHFHANPQDS SHGKFISSHS NDVHALDQLR TIKNKASSSS
401: QFVKKMMASL PYTCQSQSPS PYFDLSLFRY DEKLISAIDR HRHCTEHPIK FISVRQPNVV KFKIKPGSDS GASDSRAKRI SSFLFHPFFP LALSIQQTYM
501: QPTVVNIHFR R

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.