CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	KRH25071	AT4G05420.1	16792691
AT4G10180.1	KRH43086	AT4G05420.1	16792691
AT4G10180.1	KRH59212	AT4G05420.1	16792691
AT4G10180.1	KRH59213	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18185	Soybean	nucleus	16.46	89.19
KRH27796	Soybean	mitochondrion	97.26	72.76
KRH77746	Soybean	mitochondrion	96.76	72.39
PGSC0003DMT400080769	Potato	cytosol	52.62	71.04
VIT_15s0048g02140.t01	Wine grape	mitochondrion	80.8	61.02
GSMUA_Achr7P07410_001	Banana	cytosol, mitochondrion	43.89	60.48
Solyc01g056340.2.1	Tomato	mitochondrion	73.82	56.6
HORVU3Hr1G044640.3	Barley	mitochondrion	65.34	54.36
EES13430	Sorghum	mitochondrion	66.08	51.86
TraesCS3B01G231100.1	Wheat	mitochondrion	65.34	51.27
Os01t0104600-01	Rice	mitochondrion	65.34	51.27
TraesCS3A01G194600.1	Wheat	mitochondrion	65.09	51.08
CDY05087	Canola	plastid	68.08	50.93
CDX90747	Canola	mitochondrion, nucleus, plastid	68.08	50.84
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	67.83	50.65
Zm00001d009288_P014	Maize	mitochondrion	64.09	50.1
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	67.58	49.91
TraesCS4D01G180900.3	Wheat	mitochondrion	63.34	49.71
Zm00001d040485_P001	Maize	mitochondrion	17.96	48.32
Zm00001d020989_P011	Maize	plastid	64.59	48.14
Zm00001d024743_P001	Maize	cytosol	13.47	46.55
TraesCS4A01G125100.1	Wheat	plastid	63.09	44.78
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	24.19	40.25

Protein Annotations

EMBL:ACUP02008735	EnsemblPlants:KRH15950	EnsemblPlantsGene:GLYMA_14G121600	InterPro:De-etiolated_protein_1_Det1	PANTHER:PTHR13374	PFAM:PF09737
ProteinID:KRH15950	ProteinID:KRH15950.1	SEG:seg	UniParc:UPI0006ED8230	UniProt:A0A0R0GC76	MapMan:19.2.2.8.3.3.2

Description

hypothetical protein

Coordinates

chr14:+:17544093..17547984

Molecular Weight (calculated)

46824.3 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.332

Length

401 amino acids

Sequence
(BLAST)

001: VHHARRFYEN LVPSYTVYEV ECPDHSFRKF TDDGQYLISF SRNHQELIVY RPRWLSFSCK DEDCDKHDLP SRAKRFDSFF TQLYCVALAS CNELICKDFF
101: LYMESNQFGL FSTSTAQIHD APAVGGVVQG VPSIEKITFH LLRLEDGEIL DKKVFSNDFV NLTHNMGVFL YDDLLAIVSL RYQTIHILQI RDSRNLVDVR
201: AIGEFCREDD ELFLNSNAQG MALSDKNKQL QLPGNHIENH LHQGQPNLGN SFLSGIKQRL LSFIFQGLWN EERDDTLRIQ RLRKKFYFHF QDYVDLIIWK
301: VQFLDRHHLL IKFGSVDGGV SRNADHHPTF VVVYNMDTTE IVSFYQNSPD ELYLLFEQFC DHFHATSRNS MYMNFISSHS NNIHALEQLW SIKDKASSSA
401: Q

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.