Factsheet for GSMUA_Achr7P07400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome, mitochondrion

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P07200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	GSMUA_Achr8P07200_001	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18185	Soybean	nucleus	20.33	66.22
Zm00001d024743_P001	Maize	cytosol	25.31	52.59
Zm00001d040485_P001	Maize	mitochondrion	25.31	40.94
EES13430	Sorghum	mitochondrion	76.76	36.2
Os01t0104600-01	Rice	mitochondrion	75.93	35.81
TraesCS3B01G231100.1	Wheat	mitochondrion	75.1	35.42
TraesCS3A01G194600.1	Wheat	mitochondrion	75.1	35.42
VIT_15s0048g02140.t01	Wine grape	mitochondrion	76.35	34.65
Solyc01g056340.2.1	Tomato	mitochondrion	74.69	34.42
TraesCS4D01G180900.3	Wheat	mitochondrion	72.61	34.25
Zm00001d020989_P011	Maize	plastid	75.52	33.83
KRH27796	Soybean	mitochondrion	73.03	32.84
KRH77746	Soybean	mitochondrion	73.03	32.84
HORVU3Hr1G044640.3	Barley	mitochondrion	64.73	32.37
CDY05087	Canola	plastid	70.95	31.9
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	71.78	31.86
CDX90747	Canola	mitochondrion, nucleus, plastid	70.95	31.84
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	70.95	31.84
TraesCS4A01G125100.1	Wheat	plastid	71.37	30.44
Zm00001d009288_P014	Maize	mitochondrion	56.02	26.32
KRH15950	Soybean	cytosol	40.25	24.19
PGSC0003DMT400080769	Potato	cytosol	4.56	3.7
GSMUA_Achr7P07410_001	Banana	cytosol, mitochondrion	3.73	3.09

Protein Annotations

EnsemblPlants:GSMUA_Achr7P07400_001	EnsemblPlants:GSMUA_Achr7T07400_001	EnsemblPlantsGene:GSMUA_Achr7G07400_001	GO:GO:0003674	GO:GO:0003824	InterPro:6-hairpin_glycosidase_sf
InterPro:De-etiolated_protein_1_Det1	PANTHER:PTHR13374	PFAM:PF09737	SUPFAM:SSF48208	UniParc:UPI000296F5F3	UniProt:M0TFI0
MapMan:19.2.2.8.3.3.2	:	:	:	:	:

Description

Light-mediated development protein DET1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G07400_001]

Coordinates

chr7:-:5523572..5529436

Molecular Weight (calculated)

28472.0 Da

IEP (calculated)

9.549

GRAVY (calculated)

-0.411

Length

241 amino acids

Sequence
(BLAST)

001: MFISFLERVQ HLKKKFYFHF QDYVDLIMWK AQFLDRHHLL IKFGSVDGGV SRSTDQHPAF FAVYNMETTE VIAFYQNSSE ELYSLFEQFY DHFHANSRES
101: VHANFISSHS NNIHALEQLW SMKNKQSSFS QFVKKMMTSV PYTCQSQSPS PYFDVSLFRY DEKLISSTDR HRHSTDHPIK FISRRQPNVL KFKIKPGLET
201: SGAEARTKKI CSFLFHPYLP MALSIQQTYM QPTVVNLHLR M

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.