CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	CDY68484	AT4G05420.1	16792691
AT4G10180.1	CDY69266	AT4G05420.1	16792691
AT4G10180.1	CDY69930	AT4G05420.1	16792691
AT4G10180.1	CDY70585	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	99.81	99.81
CDY05087	Canola	plastid	97.77	97.95
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	87.34	86.37
Solyc01g056340.2.1	Tomato	mitochondrion	71.69	73.61
VIT_15s0048g02140.t01	Wine grape	mitochondrion	71.88	72.69
KRH77746	Soybean	mitochondrion	71.32	71.46
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	31.84	70.95
KRH27796	Soybean	mitochondrion	70.76	70.9
KRH15950	Soybean	cytosol	50.84	68.08
EES13430	Sorghum	mitochondrion	62.57	65.75
Os01t0104600-01	Rice	mitochondrion	62.38	65.56
TraesCS3B01G231100.1	Wheat	mitochondrion	62.2	65.36
TraesCS3A01G194600.1	Wheat	mitochondrion	61.83	64.97
PGSC0003DMT400080769	Potato	cytosol	35.57	64.31
HORVU3Hr1G044640.3	Barley	mitochondrion	56.8	63.28
TraesCS4D01G180900.3	Wheat	mitochondrion	59.96	63.01
Zm00001d020989_P011	Maize	plastid	61.64	61.52
GSMUA_Achr7P07410_001	Banana	cytosol, mitochondrion	33.15	61.17
TraesCS4A01G125100.1	Wheat	plastid	59.78	56.81
Zm00001d009288_P014	Maize	mitochondrion	53.82	56.34
KRH18185	Soybean	nucleus	7.26	52.7
Zm00001d040485_P001	Maize	mitochondrion	14.34	51.68
Zm00001d024743_P001	Maize	cytosol	10.99	50.86

Protein Annotations

EnsemblPlants:CDX90747	EnsemblPlantsGene:GSBRNA2T00151439001	GO:A0A078DP36	GO:GO:0003674	GO:GO:0003824	InterPro:6-hairpin_glycosidase_sf
InterPro:De-etiolated_protein_1_Det1	PANTHER:PTHR13374	PFAM:PF09737	ProteinID:CDX90747	ProteinID:CDX90747.1	SEG:seg
SUPFAM:SSF48208	UniParc:UPI0004EDC1F3	MapMan:19.2.2.8.3.3.2	:	:	:

Description

BnaA03g24270D

Coordinates

chrLK031864:+:297926..300654

Molecular Weight (calculated)

61874.4 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.310

Length

537 amino acids

Sequence
(BLAST)

001: MFSSGNVTSR VFERQIRSSP PGASVNRARK FYENLVPSHT LYDVECPDHC FRKFTEDGLF LISFSRNHQE LVVYRPSWLT YTSVSDDTLP PLPRRASRFD
101: SFFTQLYSVN LASANELICK DFFLYFPSRR FGLFATSTAQ IHDSAPSPGA VPGVPSIDKI TFVLLRLDDG VVLDERVFVH DFVNLAYNMG VFMYDDLLAI
201: LSLRYQKIHL LQIRDSGHLV DARAIGYFCR EDDELFLNSN SQAMMMTTTQ DKNKQQNRED DGDNGLNHTQ LNADNNSFLS GIKQRLLSFI FREIWNEESD
301: NTVRVQSLKK KFYFHFQDYV DLIIWKVQFL DRHHLLIKFG SVDGGVGRNA DHLPAFFAVY NMETTDIVAF YQNSAEDLYQ LFEQFSDHFT VSSSSPFMNF
401: VTSHSNSVHA LEQLKYLKNK SNSFSQFVKK MLVSLPFSCQ SQSPSPYFDQ SLFRFDEKLI SAADRHRQSS DNPIKFISRR KPETLKFKIK PGPECGSADG
501: RSKKICSFLF HPHLPLAISI QQTLFMPPSV VNIHFRR

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.