Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G180900.3 | Wheat | mitochondrion | 89.38 | 98.83 |
| TraesCS3A01G194600.1 | Wheat | mitochondrion | 86.02 | 95.11 |
| HORVU3Hr1G044640.3 | Barley | mitochondrion | 80.18 | 93.98 |
| Os01t0104600-01 | Rice | mitochondrion | 80.53 | 89.04 |
| EES13430 | Sorghum | mitochondrion | 80.0 | 88.45 |
| Zm00001d020989_P011 | Maize | plastid | 77.52 | 81.41 |
| GSMUA_Achr7P07400_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 30.44 | 71.37 |
| Solyc01g056340.2.1 | Tomato | mitochondrion | 60.71 | 65.58 |
| VIT_15s0048g02140.t01 | Wine grape | mitochondrion | 61.24 | 65.16 |
| KRH27796 | Soybean | mitochondrion | 61.24 | 64.55 |
| KRH77746 | Soybean | mitochondrion | 61.24 | 64.55 |
| PGSC0003DMT400080769 | Potato | cytosol | 33.27 | 63.3 |
| KRH15950 | Soybean | cytosol | 44.78 | 63.09 |
| Bra000702.1-P | Field mustard | mitochondrion, nucleus, plastid | 56.81 | 59.78 |
| CDX90747 | Canola | mitochondrion, nucleus, plastid | 56.81 | 59.78 |
| Zm00001d040485_P001 | Maize | mitochondrion | 15.75 | 59.73 |
| CDY05087 | Canola | plastid | 56.64 | 59.7 |
| AT4G10180.1 | Thale cress | mitochondrion, nucleus, peroxisome | 56.99 | 59.3 |
| Zm00001d024743_P001 | Maize | cytosol | 11.15 | 54.31 |
| KRH18185 | Soybean | nucleus | 7.08 | 54.05 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G125100.1 | EnsemblPlantsGene:TraesCS4A01G125100 | InterPro:De-etiolated_protein_1_Det1 | PANTHER:PTHR13374 | PFAM:PF09737 | SEG:seg |
| MapMan:19.2.2.8.3.3.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:160246890..160259067
Molecular Weight (calculated)
64531.2 Da
IEP (calculated)
7.941
GRAVY (calculated)
-0.316
Length
565 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTPQAKIPF PRPSSHPLTS TPAANSSNPR RPTPTLSGAC ASDASAPASA TGGAVMVGFF RSGNLASRVF DRQFLSPRPG ATVNTVRQFY ENLVPSYTIY
101: GIDCPDYSFR KFTDDGKYLV AFSRNHQDLI VYRPIWLTFS CHEECDSHDL PANAERFDSF FKQLYSISLA SSNEYICEDF FLYMECHQYG LFATSTARSN
201: ESSVTEGAIH GVPSIEKITF YLVRLEDGAI LDEKAFCNDF INLAHSIGAY LYEDLVCIVS LRYQTIHVLQ IRDSGSLVEV RRIGAFCRED DELFLYSHGQ
301: AAQGSSFLPG IKQRLLSFIF RKTWNEEPDQ ALRVQHLKKK FYFHFQDYVD LIIWKVQFLD RHHLFIKFGS VNGRVTRSTD QNLAFFAVYN METTEIVSLY
401: QNSSEELYSL FEHYYDHFHA NPQNSLHEKF ISSNPNSVHA PDQLRTIKSK ASSPSQFVKK MMASLPYTCQ SQSPSPYFDL SIFRYDEKLF SAIDRHRHCT
501: EYPIKFISVR QPNVVKFKIK PGSDSGASDS RGKRISSLFH PFFPLALSIQ QTNMQPTVVN VHFRR
101: GIDCPDYSFR KFTDDGKYLV AFSRNHQDLI VYRPIWLTFS CHEECDSHDL PANAERFDSF FKQLYSISLA SSNEYICEDF FLYMECHQYG LFATSTARSN
201: ESSVTEGAIH GVPSIEKITF YLVRLEDGAI LDEKAFCNDF INLAHSIGAY LYEDLVCIVS LRYQTIHVLQ IRDSGSLVEV RRIGAFCRED DELFLYSHGQ
301: AAQGSSFLPG IKQRLLSFIF RKTWNEEPDQ ALRVQHLKKK FYFHFQDYVD LIIWKVQFLD RHHLFIKFGS VNGRVTRSTD QNLAFFAVYN METTEIVSLY
401: QNSSEELYSL FEHYYDHFHA NPQNSLHEKF ISSNPNSVHA PDQLRTIKSK ASSPSQFVKK MMASLPYTCQ SQSPSPYFDL SIFRYDEKLF SAIDRHRHCT
501: EYPIKFISVR QPNVVKFKIK PGSDSGASDS RGKRISSLFH PFFPLALSIQ QTNMQPTVVN VHFRR
001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
Arabidopsis Description
DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]
SUBAcon: [mitochondrion,peroxisome,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.