Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G240600.1 | Wheat | cytosol | 90.98 | 95.65 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 10.03 | 93.16 |
| HORVU3Hr1G050820.11 | Barley | plastid | 89.97 | 86.4 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 12.88 | 70.35 |
| CDY70585 | Canola | plastid | 22.45 | 68.73 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 31.28 | 68.0 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 67.89 | 67.77 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 66.51 | 66.39 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 66.15 | 66.21 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 66.24 | 66.18 |
| Solyc02g021650.2.1 | Tomato | nucleus | 66.61 | 66.12 |
| AT4G21100.1 | Thale cress | nucleus | 65.04 | 64.98 |
| KRH25071 | Soybean | nucleus | 35.6 | 64.82 |
| CDY69930 | Canola | plastid | 27.97 | 64.82 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 31.74 | 64.49 |
| CDY69266 | Canola | nucleus | 32.38 | 64.23 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 64.4 | 63.46 |
| KRH59212 | Soybean | cytosol, nucleus | 30.54 | 62.29 |
| KRH43086 | Soybean | nucleus | 11.5 | 61.58 |
| CDX76416 | Canola | cytosol | 63.85 | 61.52 |
| Bra020884.1-P | Field mustard | cytosol | 63.85 | 54.13 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 12.14 | 41.77 |
| PGSC0003DMT400009595 | Potato | nucleus | 9.94 | 41.38 |
| CDY54326 | Canola | cytosol | 7.45 | 35.37 |
| TraesCS6A01G107200.1 | Wheat | nucleus | 21.62 | 19.15 |
| TraesCS2A01G243300.3 | Wheat | plastid | 18.58 | 14.84 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | Gene3D:3.30.980.30 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:DDB1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR015943 | PFAM:PF03178 |
| PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS3A01G210100 | EnsemblPlants:TraesCS3A01G210100.2 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:+:375011230..375021464
Molecular Weight (calculated)
121455.0 Da
IEP (calculated)
6.543
GRAVY (calculated)
-0.007
Length
1087 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRAWNCVVTA HKPTAVSHSC VGNFTAPHQL NLIVAKCNHI EIYMFTPQGL QLMLDVPLYG TIATLELYRS SSETQDFLFI GMERYRYCVL QWDGRKSELL
0101: TRSEGDASEF LGRPTDNGQI GIIDRHYRLI ALHLYDGLFK VIPFDNKGHL KEALNIRLEE LVVLDIKFLY RCENPTVVVL YQDNKDARHV KTYEIELEDK
0201: KFVEGSWSQN NLDHSARLLI PVPLGGVIIV GEDTIVYCSS ETTKSLSIKQ SIIRAVGRVD QCGSRYLYGD NTGALHLLTI THESGRVTGL KSHFIGETSI
0301: ASTISYVGSG FFYVGSQFGD SQLLKLNTQA DARGSFVEIL EQYINIGPIV DLCVVDFERQ GQGQVITCSG AHKDGSIRTI RNEIVITDQA SLQLHGMKGL
0401: WSLKCSSNDP YDTFLVVTFI NETRFLAINK ENKLVETPIE GFDSETQTLV CGSAIHNQLI QVTAQSVRLV SSTSRDLLDQ WFAPTGFPVN VAAANACQVL
0501: LATGGFHLIY LEITNSKLVE VKHVELEHAI SCLDINPIGE NLQYSSLAAV GMWTDTSVRI FSLPGIVLIR KENLGEDVPR SVLLCTIEEV SYLFCALGDG
0601: HLFSSVLNIN TCELSDRSRV SLGTQPISLY KFSSHDRTHV LAASDRPTII CSSDKKLLYS YVNLKEMNHV CPFNTVIFSR KVPPSLMLCT IAIAKEAELS
0701: IGAINYSRKR HIHTIPLNEH ARRICHQEQS QTLALCSFKN KYMHGVSETH FVRLLDHQTF GILSTHTLDA FECGCSIISC SFSGDDNFYY CVGTAYVLPM
0801: EDEPTKGRIL LFLVKEGKLQ LIKAKETKGA VYSLKSFNGK LLAAINLKIR LYKWMQRNDR SRVLQFECAH DGHVLSLYTQ TRGDFILVGD MMRSLSLLIY
0901: KHEEGKIEEV ARDLNTNWMT AVEMLDDDIY IGADNCCNLF TVFKSPYGFL EPVGEYHLGD VVNRLHHGSL VMHHADSGTG QFPSVIFGTV NGAIGVIASL
1001: PYDLYAFLEK PQSVLVNFVK GVGNLSHAEW RSFCNARRTS SARNFVDGDL IESFFSLSPS QMVEVACAMG VPPVELYKQV QELTNLH
0101: TRSEGDASEF LGRPTDNGQI GIIDRHYRLI ALHLYDGLFK VIPFDNKGHL KEALNIRLEE LVVLDIKFLY RCENPTVVVL YQDNKDARHV KTYEIELEDK
0201: KFVEGSWSQN NLDHSARLLI PVPLGGVIIV GEDTIVYCSS ETTKSLSIKQ SIIRAVGRVD QCGSRYLYGD NTGALHLLTI THESGRVTGL KSHFIGETSI
0301: ASTISYVGSG FFYVGSQFGD SQLLKLNTQA DARGSFVEIL EQYINIGPIV DLCVVDFERQ GQGQVITCSG AHKDGSIRTI RNEIVITDQA SLQLHGMKGL
0401: WSLKCSSNDP YDTFLVVTFI NETRFLAINK ENKLVETPIE GFDSETQTLV CGSAIHNQLI QVTAQSVRLV SSTSRDLLDQ WFAPTGFPVN VAAANACQVL
0501: LATGGFHLIY LEITNSKLVE VKHVELEHAI SCLDINPIGE NLQYSSLAAV GMWTDTSVRI FSLPGIVLIR KENLGEDVPR SVLLCTIEEV SYLFCALGDG
0601: HLFSSVLNIN TCELSDRSRV SLGTQPISLY KFSSHDRTHV LAASDRPTII CSSDKKLLYS YVNLKEMNHV CPFNTVIFSR KVPPSLMLCT IAIAKEAELS
0701: IGAINYSRKR HIHTIPLNEH ARRICHQEQS QTLALCSFKN KYMHGVSETH FVRLLDHQTF GILSTHTLDA FECGCSIISC SFSGDDNFYY CVGTAYVLPM
0801: EDEPTKGRIL LFLVKEGKLQ LIKAKETKGA VYSLKSFNGK LLAAINLKIR LYKWMQRNDR SRVLQFECAH DGHVLSLYTQ TRGDFILVGD MMRSLSLLIY
0901: KHEEGKIEEV ARDLNTNWMT AVEMLDDDIY IGADNCCNLF TVFKSPYGFL EPVGEYHLGD VVNRLHHGSL VMHHADSGTG QFPSVIFGTV NGAIGVIASL
1001: PYDLYAFLEK PQSVLVNFVK GVGNLSHAEW RSFCNARRTS SARNFVDGDL IESFFSLSPS QMVEVACAMG VPPVELYKQV QELTNLH
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.