Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G246700.4 | Wheat | nucleus | 96.94 | 97.6 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 95.58 | 95.25 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 92.31 | 92.38 |
| OQU77880 | Sorghum | nucleus | 49.93 | 51.51 |
| Os05t0371100-00 | Rice | cytosol | 5.03 | 50.68 |
| Zm00001d010490_P005 | Maize | nucleus | 48.98 | 50.63 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.06 | 47.87 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.15 | 38.12 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.29 | 33.33 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.04 | 32.61 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.53 | 29.91 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.39 | 29.75 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.26 | 29.02 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.19 | 28.09 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.19 | 28.09 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 27.01 | 28.06 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 30.14 | 28.04 |
| PGSC0003DMT400031270 | Potato | nucleus | 5.99 | 27.41 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 27.69 | 25.68 |
| CDX76670 | Canola | nucleus | 22.24 | 25.45 |
| AT3G62900.2 | Thale cress | nucleus | 24.29 | 25.45 |
| Bra007709.1-P | Field mustard | nucleus | 22.38 | 25.37 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.31 | 25.24 |
| CDY11456 | Canola | nucleus | 22.24 | 25.21 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 27.82 | 24.88 |
| CDX67908 | Canola | nucleus | 22.11 | 24.83 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 27.21 | 24.69 |
| Bra003514.1-P | Field mustard | nucleus | 22.04 | 24.53 |
| CDY25123 | Canola | nucleus | 21.97 | 24.45 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.06 | 24.19 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.35 | 24.15 |
| KRG96403 | Soybean | nucleus | 26.87 | 23.5 |
| CDY54298 | Canola | nucleus | 14.97 | 23.4 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.9 | 23.33 |
| CDY66331 | Canola | nucleus | 14.83 | 23.29 |
| Bra033505.1-P | Field mustard | nucleus | 14.76 | 23.18 |
| KRH68140 | Soybean | nucleus | 26.12 | 22.98 |
| AT4G15730.1 | Thale cress | nucleus | 16.39 | 22.76 |
| CDY18138 | Canola | nucleus | 14.15 | 21.85 |
| Bra032575.1-P | Field mustard | nucleus | 10.41 | 21.83 |
| CDX89924 | Canola | nucleus | 14.08 | 21.61 |
| Solyc09g074670.2.1 | Tomato | nucleus | 24.15 | 21.41 |
| Solyc06g008720.2.1 | Tomato | nucleus | 18.1 | 20.91 |
| CDY37451 | Canola | nucleus | 14.69 | 20.83 |
| CDY32489 | Canola | nucleus | 15.03 | 20.56 |
| Solyc01g067600.2.1 | Tomato | nucleus | 22.72 | 20.24 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.54 | 20.16 |
| KRH12132 | Soybean | nucleus | 22.99 | 19.99 |
| KRH37127 | Soybean | nucleus | 22.72 | 19.95 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 17.76 | 19.92 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 22.04 | 19.9 |
| KRH02231 | Soybean | nucleus | 21.5 | 19.45 |
| KRH50884 | Soybean | nucleus | 21.16 | 19.34 |
| AT1G02990.4 | Thale cress | nucleus | 16.26 | 18.7 |
| Bra033364.1-P | Field mustard | nucleus | 15.65 | 14.95 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G235200.1 | EnsemblPlantsGene:TraesCS1D01G235200 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 | PFscan:PS51050 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:324408729..324419247
Molecular Weight (calculated)
159686.0 Da
IEP (calculated)
8.673
GRAVY (calculated)
-0.782
Length
1470 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLGGGARREA GHEEGELELE DGQALGGGPD AGGHELLDPD SLTHIDERLQ NVLGHFQKDF EGGVLAENLG SRYGGYGSFL PPNQHSPSVA TQSRSPTVPP
0101: NRGSASRSPY VPVESAQKSH FVKNGLDSRG KDDYCQRTSN GTNGNPQQRM LNRAVNGPEQ KAPKIRIKVN NNRHFARNTA AIYSGLGLDI SPSSSMDDSL
0201: DGCAGAPEPK NLPDESPHTI LQIMTCHPIP GGLLLSPLTE NILALRKKSA SARKKHEAPA FDDDKTELNR DWCHTTSAAQ GDKDQMVHKY NYDEKKDHLL
0301: NIKSSKSKRD NSTIMNNGTM PDLLDISDDK DSIVPGSMQT EQHSLEASAK LVTDVSNHLK ETKNVPLKGR IRDKIPLRDI ESVHVKAVNL ANDDNYPKGK
0401: ANSEACTVRN SFDNLSKDSK TEPTLGQELV DKIKYDSDGY DHRLSTTSSQ PNNLPPSGTA TSVDRDKRKV VHVKDEPSQC KREESGGLVN ADSMDIITEN
0501: VGGNPSGMPK RKMKISSLQT APSGKKLKVK AHKQLSNGIT RKSHGEDKSV KLEKETVSSG ETDNGRSDGV NDGDHKISPL NIDRSAPVPS ACMTGAMESS
0601: VAVPVEPVLI NEQWVCCDKC EKWRLLPYWM NPDVLPKKWR CSMQSWLHGM NNCKVSEDET TKALRAMPLA PENNISVDVR HDIATSGVCA ATIPPTIQGG
0701: IKSIATSGTL KVDSSANTSN NLKMGEMSKS SKKLEAPTSR NPDDVDCFPK QKGKRKHIGS SDDGETVSVD RLHPESKSSS VGFDHDSLRA SKKMKKEPNE
0801: PAKHHPSEFE ISKSSPSIKG TPKSLHRYSG VSPSMGKYGS SSLVKCNDDK IISNGGIRTS DVGRSDVPEL SIKNRKSKQR QLSKRGPDPV VSNAFPKHTV
0901: EEALSESNHA KENPMPELNF LKADDRKVAH ARGPIAGTDS DKECLSEQHQ ENTHLQQHSL LSQNSMKKNM CHAQASAAAT SSSSKVSSSH KSKVDFQETR
1001: ASPVESVSSS PLRTSDKNLV DQHKRYPSAV AEKVLSQESG KSCLSFSKEK NDFGSGSNHA KAHGSGCLSG DMHHHVLKDG ELQKDKQDNE CSKNEDSGLG
1101: TRNGLLNPVK VQKVNSHVLS IRGNGDDKLP PSLQNGKTPP HLSSNQCDHA KLTSGKHPVQ VKPDKGDAEQ KDMKTNPSTV KGSKQQPALN DSSNGDLLYK
1201: AKQLKKAVLE NTKQATLSRD ALNPVNTSVL LKEARDLKHL SKRLKEKGDD LESANMCFEA GLKFLHVASL LEAPSIDSSK QGDSIQAMRL YSETGNLCGF
1301: CAREFERLKK MASAALAYKC VEVAYMKAAF YKHPGAIKDK HALQATSLMV PPAESPSSSA SDVDNLNNQS TAAKAISRAL YSPKIGGNSI PRNNHHLMGL
1401: LAYADDINYA FDGTRKSQSS LAAYVTDIGK GQADGIALVR EVLEFSFHNV KGLLQLIRHS LESINHEGVK
0101: NRGSASRSPY VPVESAQKSH FVKNGLDSRG KDDYCQRTSN GTNGNPQQRM LNRAVNGPEQ KAPKIRIKVN NNRHFARNTA AIYSGLGLDI SPSSSMDDSL
0201: DGCAGAPEPK NLPDESPHTI LQIMTCHPIP GGLLLSPLTE NILALRKKSA SARKKHEAPA FDDDKTELNR DWCHTTSAAQ GDKDQMVHKY NYDEKKDHLL
0301: NIKSSKSKRD NSTIMNNGTM PDLLDISDDK DSIVPGSMQT EQHSLEASAK LVTDVSNHLK ETKNVPLKGR IRDKIPLRDI ESVHVKAVNL ANDDNYPKGK
0401: ANSEACTVRN SFDNLSKDSK TEPTLGQELV DKIKYDSDGY DHRLSTTSSQ PNNLPPSGTA TSVDRDKRKV VHVKDEPSQC KREESGGLVN ADSMDIITEN
0501: VGGNPSGMPK RKMKISSLQT APSGKKLKVK AHKQLSNGIT RKSHGEDKSV KLEKETVSSG ETDNGRSDGV NDGDHKISPL NIDRSAPVPS ACMTGAMESS
0601: VAVPVEPVLI NEQWVCCDKC EKWRLLPYWM NPDVLPKKWR CSMQSWLHGM NNCKVSEDET TKALRAMPLA PENNISVDVR HDIATSGVCA ATIPPTIQGG
0701: IKSIATSGTL KVDSSANTSN NLKMGEMSKS SKKLEAPTSR NPDDVDCFPK QKGKRKHIGS SDDGETVSVD RLHPESKSSS VGFDHDSLRA SKKMKKEPNE
0801: PAKHHPSEFE ISKSSPSIKG TPKSLHRYSG VSPSMGKYGS SSLVKCNDDK IISNGGIRTS DVGRSDVPEL SIKNRKSKQR QLSKRGPDPV VSNAFPKHTV
0901: EEALSESNHA KENPMPELNF LKADDRKVAH ARGPIAGTDS DKECLSEQHQ ENTHLQQHSL LSQNSMKKNM CHAQASAAAT SSSSKVSSSH KSKVDFQETR
1001: ASPVESVSSS PLRTSDKNLV DQHKRYPSAV AEKVLSQESG KSCLSFSKEK NDFGSGSNHA KAHGSGCLSG DMHHHVLKDG ELQKDKQDNE CSKNEDSGLG
1101: TRNGLLNPVK VQKVNSHVLS IRGNGDDKLP PSLQNGKTPP HLSSNQCDHA KLTSGKHPVQ VKPDKGDAEQ KDMKTNPSTV KGSKQQPALN DSSNGDLLYK
1201: AKQLKKAVLE NTKQATLSRD ALNPVNTSVL LKEARDLKHL SKRLKEKGDD LESANMCFEA GLKFLHVASL LEAPSIDSSK QGDSIQAMRL YSETGNLCGF
1301: CAREFERLKK MASAALAYKC VEVAYMKAAF YKHPGAIKDK HALQATSLMV PPAESPSSSA SDVDNLNNQS TAAKAISRAL YSPKIGGNSI PRNNHHLMGL
1401: LAYADDINYA FDGTRKSQSS LAAYVTDIGK GQADGIALVR EVLEFSFHNV KGLLQLIRHS LESINHEGVK
0001: MILVSSSDAR SELGLGFGGL GEEIMQDCDF EEESTHSYVS CVDPDVALSY IDEKLENVLG HFQKDFEGGV SAENLGAKFG GYGSFLSMYQ RSPVCSRPKT
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.