Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11456 | Canola | nucleus | 92.61 | 91.75 |
| CDX67908 | Canola | nucleus | 66.07 | 64.86 |
| CDY25123 | Canola | nucleus | 65.76 | 63.97 |
| AT3G62900.2 | Thale cress | nucleus | 66.54 | 60.94 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 6.93 | 55.62 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 2.02 | 45.61 |
| Os05t0371100-00 | Rice | cytosol | 3.66 | 32.19 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 38.21 | 30.31 |
| CDY18138 | Canola | nucleus | 21.63 | 29.2 |
| CDX89924 | Canola | nucleus | 21.63 | 29.02 |
| KRH68140 | Soybean | nucleus | 36.03 | 27.71 |
| CDY37451 | Canola | nucleus | 22.1 | 27.39 |
| KRG96403 | Soybean | nucleus | 35.72 | 27.31 |
| CDY32489 | Canola | nucleus | 22.49 | 26.88 |
| CDY54298 | Canola | nucleus | 19.22 | 26.28 |
| CDY66331 | Canola | nucleus | 18.83 | 25.85 |
| Solyc09g074670.2.1 | Tomato | nucleus | 32.22 | 24.97 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 17.9 | 24.81 |
| Solyc06g008720.2.1 | Tomato | nucleus | 24.44 | 24.69 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 27.08 | 24.59 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 28.72 | 23.28 |
| KXG39393 | Sorghum | mitochondrion | 24.05 | 23.08 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 25.53 | 22.47 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 25.45 | 22.24 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 27.32 | 22.2 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 27.24 | 22.15 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 28.33 | 22.14 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 27.16 | 22.07 |
| Zm00001d029134_P004 | Maize | mitochondrion | 23.42 | 22.05 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 25.21 | 21.97 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 24.9 | 21.78 |
| Zm00001d022481_P019 | Maize | nucleus | 27.0 | 21.78 |
| OQU90452 | Sorghum | nucleus | 26.61 | 21.4 |
| Zm00001d010490_P005 | Maize | nucleus | 23.66 | 21.38 |
| Zm00001d007121_P024 | Maize | nucleus | 26.07 | 21.04 |
| Os07t0669800-01 | Rice | nucleus | 16.89 | 20.71 |
| OQU77880 | Sorghum | nucleus | 22.96 | 20.7 |
Protein Annotations
| EnsemblPlants:CDX76670 | EnsemblPlantsGene:GSBRNA2T00127146001 | Gene3D:3.30.40.100 | GO:A0A078CIG7 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 |
| PFscan:PS51050 | ProteinID:CDX76670 | ProteinID:CDX76670.1 | SEG:seg | UniParc:UPI0004EF2540 | MapMan:35.2 |
Description
BnaC08g32560D
Coordinates
chrLK031808:-:420070..425635
Molecular Weight (calculated)
140499.0 Da
IEP (calculated)
9.202
GRAVY (calculated)
-0.954
Length
1285 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEESELEEGE ACSYNTLNDF GGTIDPDNDL SYIDDKLQNI LGHFKKDFEG DFSAENLGAK FGGYGSFLPT YQRSPLWSHP KTPAKPQSSA GTRSPNILLS
0101: ESQSGNAASS TVPKKEKPGL VSSRIPKKSM KSKKPNSSSR QETETKKPGV FSKQNSLKLR IKMGSDNLST DNNAAAIKSG LGLDLSPSLS SDNNNSLSGS
0201: EGMNGEPQGC SPSPLESPTC ILNAMTSIPV DHCQLLSPLS DDLIRFIERE TPQNGYKYMA KGVETQKAGE KQSVEKKRKM VETNVRSKKG VLDGTDTTVK
0301: EPTETNTSYP ENNERASSTL FDASKEKYNG RVKGEMVGDV DRRTWDLTRH KDPKTSSAGS AREDKKTNDD ASGHSRKVGI HKGSKAPDLV KKETSTTKVK
0401: SGHKKRSDHI EQELQSSSKF KEHRSSKMNG EAEKKEVAAL KPKNSGKKTE ETYKDFFGDM EDSEEEEEEP NCSLSEKGLP ALEDMPEKSS FTRAESQNVG
0501: PGPVLSKLGS NPVIIQDNWV ACDKCGKWRL LPYGVLPKDL PKKWMCTMLN WLPDANYCHV PEDETTKALY ALYQIPAPDS QASVQSNPSG LKPQGDDNTK
0601: KKKKGLRKMD NGMDREVSRT AETSKKTVLT SARNGNVHNS QGIGDLADDK HKQKVKGNLS DEPRSLKVNN KRKADQESSM LAEKMKIESF LFPDESEHCN
0701: GVPAASAERN SKPRVTTSKV PKEEGGGASD TGNSNSTGGS KKRKLKESHG SRLYADEGNH ERKKARLLKE EKEPSFSHGN VKSEKRNTSH SRREHGHVAA
0801: TSSSSKISDS HKPRNSSHEA KCSPVESVTS SPMRISSLGK SVSARKKKVE SSYGEGEDDG GSDRSQTRTK DKHGSNESSV PDVWDNKGSL KAKERPEPSL
0901: DANFENGGEG KQPSDHQRHS NDSLAKKSGK GLSSRCKDKS INMSSDSGDG PRLIDKKIHL DSPDGRVDTV ARPNIPKPHD VERISERSNK ADLASPSRPP
1001: SSRGVQGDSS IKATTQIRRK NEPSPSPMRK EVTAVQAGHN ILKEAKDLKH TADRLKDSLS NLEFIELYFQ ACIKFLHGAF VLEMSSNESA SRQGETMAQS
1101: VHIYISTANL CGFCAQEYEK SKDMGAAALA YKCMEAAYMR VVNSSYISVN RYRHELQTSL QMVPPGESPS SSASDVDNVN HPAGGADKAG NSRGISSPLV
1201: AGNHVISAQN RFNILRLLQF AQNVNLGMDA SRKSRVALAA SVENLEEAQQ QGEGIISIKS ALDYNFQDLE GLLLLVKLAM KANNR
0101: ESQSGNAASS TVPKKEKPGL VSSRIPKKSM KSKKPNSSSR QETETKKPGV FSKQNSLKLR IKMGSDNLST DNNAAAIKSG LGLDLSPSLS SDNNNSLSGS
0201: EGMNGEPQGC SPSPLESPTC ILNAMTSIPV DHCQLLSPLS DDLIRFIERE TPQNGYKYMA KGVETQKAGE KQSVEKKRKM VETNVRSKKG VLDGTDTTVK
0301: EPTETNTSYP ENNERASSTL FDASKEKYNG RVKGEMVGDV DRRTWDLTRH KDPKTSSAGS AREDKKTNDD ASGHSRKVGI HKGSKAPDLV KKETSTTKVK
0401: SGHKKRSDHI EQELQSSSKF KEHRSSKMNG EAEKKEVAAL KPKNSGKKTE ETYKDFFGDM EDSEEEEEEP NCSLSEKGLP ALEDMPEKSS FTRAESQNVG
0501: PGPVLSKLGS NPVIIQDNWV ACDKCGKWRL LPYGVLPKDL PKKWMCTMLN WLPDANYCHV PEDETTKALY ALYQIPAPDS QASVQSNPSG LKPQGDDNTK
0601: KKKKGLRKMD NGMDREVSRT AETSKKTVLT SARNGNVHNS QGIGDLADDK HKQKVKGNLS DEPRSLKVNN KRKADQESSM LAEKMKIESF LFPDESEHCN
0701: GVPAASAERN SKPRVTTSKV PKEEGGGASD TGNSNSTGGS KKRKLKESHG SRLYADEGNH ERKKARLLKE EKEPSFSHGN VKSEKRNTSH SRREHGHVAA
0801: TSSSSKISDS HKPRNSSHEA KCSPVESVTS SPMRISSLGK SVSARKKKVE SSYGEGEDDG GSDRSQTRTK DKHGSNESSV PDVWDNKGSL KAKERPEPSL
0901: DANFENGGEG KQPSDHQRHS NDSLAKKSGK GLSSRCKDKS INMSSDSGDG PRLIDKKIHL DSPDGRVDTV ARPNIPKPHD VERISERSNK ADLASPSRPP
1001: SSRGVQGDSS IKATTQIRRK NEPSPSPMRK EVTAVQAGHN ILKEAKDLKH TADRLKDSLS NLEFIELYFQ ACIKFLHGAF VLEMSSNESA SRQGETMAQS
1101: VHIYISTANL CGFCAQEYEK SKDMGAAALA YKCMEAAYMR VVNSSYISVN RYRHELQTSL QMVPPGESPS SSASDVDNVN HPAGGADKAG NSRGISSPLV
1201: AGNHVISAQN RFNILRLLQF AQNVNLGMDA SRKSRVALAA SVENLEEAQQ QGEGIISIKS ALDYNFQDLE GLLLLVKLAM KANNR
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.