Factsheet for PGSC0003DMT400013673

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029537	Potato	mitochondrion	25.0	70.18
Solyc06g008720.2.1	Tomato	nucleus	81.25	10.22
Os03t0347300-01	Rice	cytosol, nucleus	44.38	7.66
CDX67908	Canola	nucleus	60.62	7.41
Bra003514.1-P	Field mustard	nucleus	60.62	7.34
CDY25123	Canola	nucleus	60.62	7.34
CDX76670	Canola	nucleus	55.62	6.93
CDY11456	Canola	nucleus	55.62	6.86
Bra007709.1-P	Field mustard	nucleus	55.62	6.86
AT3G62900.2	Thale cress	nucleus	59.38	6.77
VIT_07s0104g01600.t01	Wine grape	nucleus	67.5	6.67
KRH68140	Soybean	nucleus	62.5	5.98
KRG96403	Soybean	nucleus	62.5	5.95
GSMUA_Achr5P08000_001	Banana	nucleus	48.12	5.44
GSMUA_Achr3P08980_001	Banana	nucleus	49.38	4.81
GSMUA_Achr8P21920_001	Banana	nucleus	46.88	4.73
KXG39393	Sorghum	mitochondrion	39.38	4.71
Zm00001d029134_P004	Maize	mitochondrion	40.0	4.69
OQU77880	Sorghum	nucleus	41.25	4.63
TraesCS2D01G118500.1	Wheat	nucleus	45.62	4.62
TraesCS2B01G135800.1	Wheat	nucleus	45.62	4.62
TraesCS2A01G116600.1	Wheat	nucleus	45.62	4.62
Zm00001d022481_P019	Maize	nucleus	45.62	4.58
Zm00001d010490_P005	Maize	nucleus	40.62	4.57
OQU90452	Sorghum	nucleus	45.0	4.51
TraesCS1A01G237200.3	Wheat	nucleus	38.75	4.2
TraesCS1B01G246700.4	Wheat	nucleus	38.12	4.18
HORVU1Hr1G058250.1	Barley	nucleus	38.12	4.15
TraesCS1D01G235200.1	Wheat	nucleus	38.12	4.15
Zm00001d007121_P024	Maize	nucleus	38.75	3.89
PGSC0003DMT400039039	Potato	nucleus	4.38	2.18
PGSC0003DMT400029536	Potato	nucleus	8.12	2.13
PGSC0003DMT400005776	Potato	nucleus	3.12	1.94
PGSC0003DMT400005780	Potato	nucleus	3.75	1.9
PGSC0003DMT400031270	Potato	nucleus	3.75	1.87
PGSC0003DMT400039034	Potato	nucleus	3.12	1.58
PGSC0003DMT400065641	Potato	nucleus	1.25	1.08
Os07t0669800-01	Rice	nucleus	2.5	0.38
Os05t0371100-00	Rice	cytosol	0.0	0.0
PGSC0003DMT400005774	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400013673	EnsemblPlantsGene:PGSC0003DMG400005346	PANTHER:PTHR23336	PANTHER:PTHR23336:SF14	PGSC:PGSC0003DMG400005346	UniParc:UPI0002962037
UniProt:M1A367	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005346]

Coordinates

chr6:+:1214833..1222224

Molecular Weight (calculated)

17009.3 Da

IEP (calculated)

6.512

GRAVY (calculated)

0.053

Length

160 amino acids

Sequence
(BLAST)

001: MAAAALAYKC MEVAYMRVIY SSQSDANRYR NELQTALQIF PPGESPFSSI SDVDNLNNPT IVDMAASAKV VGSPQVAGTH VISAGSGSSF TQLINLAQAV
101: NFAMEGSRKS RVAFAAVYPG PGDSQCKEGA LSVKKALDFN FQDVDGLLRL VRVAMEAISH

Best Arabidopsis Sequence Match ( AT3G62900.2 )
(BLAST)

0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR

Arabidopsis Description

CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.