Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018802 | |
| PGSC0003DMT400076768 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15730.1 | PGSC0003DMT400018802 | AT4G02150.1 | 21798944 |
| AT4G15730.1 | PGSC0003DMT400076768 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005774 | Potato | cytosol | 23.12 | 46.74 |
| PGSC0003DMT400005776 | Potato | nucleus | 47.85 | 34.5 |
| PGSC0003DMT400031270 | Potato | nucleus | 48.92 | 28.35 |
| PGSC0003DMT400039034 | Potato | nucleus | 47.85 | 28.08 |
| Solyc08g067140.1.1 | Tomato | nucleus | 39.78 | 27.92 |
| PGSC0003DMT400039039 | Potato | nucleus | 47.31 | 27.41 |
| PGSC0003DMT400005780 | Potato | nucleus | 46.24 | 27.22 |
| Solyc08g067490.1.1 | Tomato | nucleus | 38.17 | 22.98 |
| Os05t0371100-00 | Rice | cytosol | 13.98 | 17.81 |
| Os07t0669800-01 | Rice | nucleus | 27.96 | 4.96 |
| Bra033505.1-P | Field mustard | nucleus | 22.58 | 4.49 |
| CDY66331 | Canola | nucleus | 22.04 | 4.38 |
| CDY54298 | Canola | nucleus | 21.51 | 4.26 |
| AT4G15730.1 | Thale cress | nucleus | 20.97 | 3.68 |
| KXG39393 | Sorghum | mitochondrion | 24.19 | 3.36 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 28.49 | 3.34 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 25.27 | 3.32 |
| Zm00001d029134_P004 | Maize | mitochondrion | 23.66 | 3.22 |
| Zm00001d022481_P019 | Maize | nucleus | 26.34 | 3.08 |
| OQU90452 | Sorghum | nucleus | 26.34 | 3.07 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 24.19 | 3.06 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 25.81 | 3.04 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 25.81 | 3.04 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 25.81 | 3.04 |
| Zm00001d007121_P024 | Maize | nucleus | 25.81 | 3.02 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 23.66 | 3.01 |
| KRH02231 | Soybean | nucleus | 25.81 | 2.95 |
| OQU77880 | Sorghum | nucleus | 22.58 | 2.95 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 23.12 | 2.93 |
| KRH37127 | Soybean | nucleus | 26.34 | 2.93 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 25.81 | 2.92 |
| KRH12132 | Soybean | nucleus | 26.34 | 2.9 |
| Zm00001d010490_P005 | Maize | nucleus | 20.97 | 2.74 |
| KRH50884 | Soybean | nucleus | 23.66 | 2.74 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 21.51 | 2.71 |
| PGSC0003DMT400029536 | Potato | nucleus | 6.45 | 1.97 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 0.54 | 1.75 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 12.37 | 1.41 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 1.08 | 1.25 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 5.91 | 1.19 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400065641 | EnsemblPlantsGene:PGSC0003DMG400025536 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PGSC:PGSC0003DMG400025536 | SEG:seg |
| UniParc:UPI0002964440 | UniProt:M1CED3 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025536]
Coordinates
chr8:+:41097558..41098118
Molecular Weight (calculated)
20762.4 Da
IEP (calculated)
4.724
GRAVY (calculated)
-0.388
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEEHEIEEG EIYDDLVYSY SDLKFPMEDD EVEEREIYDD SHIDAKIQTV LGDHMKDFEG VVSAENLRTK FGVYGSFLAS DQLVIQPQIS QKLLISSNKP
101: IRIRIKVRVS SSDNTAAPKS SDLHTASHCP ELTTSGDKPP VAPFIIQGDS IRCSKGTSIY VKAHNGREVS VVENVKYTIK LVSSVQ
101: IRIRIKVRVS SSDNTAAPKS SDLHTASHCP ELTTSGDKPP VAPFIIQGDS IRCSKGTSIY VKAHNGREVS VVENVKYTIK LVSSVQ
0001: MILVSSSDAR SELGLGFGGL GEEIMQDCDF EEESTHSYVS CVDPDVALSY IDEKLENVLG HFQKDFEGGV SAENLGAKFG GYGSFLSMYQ RSPVCSRPKT
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFVFSEVVG
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFVFSEVVG
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.