Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 2.9 | 48.94 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.73 | 46.88 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 39.68 | 44.45 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.52 | 43.48 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 41.51 | 40.02 |
| PGSC0003DMT400039034 | Potato | nucleus | 7.19 | 35.96 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.26 | 35.09 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.94 | 34.81 |
| PGSC0003DMT400039039 | Potato | nucleus | 7.0 | 34.58 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.94 | 34.27 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.94 | 33.95 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.88 | 33.64 |
| Os05t0371100-00 | Rice | cytosol | 3.03 | 32.88 |
| Zm00001d022481_P019 | Maize | nucleus | 32.05 | 31.89 |
| OQU90452 | Sorghum | nucleus | 31.86 | 31.6 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 18.42 | 31.5 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 30.47 | 30.55 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 30.41 | 30.51 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 31.1 | 30.43 |
| Zm00001d007121_P024 | Maize | nucleus | 30.54 | 30.4 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 30.28 | 30.36 |
| KXG39393 | Sorghum | mitochondrion | 25.11 | 29.72 |
| Os07t0669800-01 | Rice | nucleus | 19.05 | 28.82 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.62 | 28.8 |
| CDX76670 | Canola | nucleus | 23.28 | 28.72 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.34 | 28.49 |
| CDY11456 | Canola | nucleus | 23.28 | 28.45 |
| Bra007709.1-P | Field mustard | nucleus | 23.22 | 28.37 |
| Zm00001d029134_P004 | Maize | mitochondrion | 24.42 | 28.35 |
| CDX67908 | Canola | nucleus | 22.97 | 27.81 |
| Bra003514.1-P | Field mustard | nucleus | 23.09 | 27.71 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 25.68 | 27.69 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 25.49 | 27.67 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.61 | 27.55 |
| OQU77880 | Sorghum | nucleus | 24.67 | 27.44 |
| CDY25123 | Canola | nucleus | 22.78 | 27.33 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 25.3 | 27.19 |
| PGSC0003DMT400005776 | Potato | nucleus | 4.42 | 27.13 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 25.05 | 27.03 |
| AT3G62900.2 | Thale cress | nucleus | 23.85 | 26.94 |
| Zm00001d010490_P005 | Maize | nucleus | 24.16 | 26.93 |
| CDX89924 | Canola | nucleus | 16.03 | 26.51 |
| CDY18138 | Canola | nucleus | 15.84 | 26.37 |
| Bra033505.1-P | Field mustard | nucleus | 15.52 | 26.28 |
| CDY66331 | Canola | nucleus | 15.52 | 26.28 |
| KRH68140 | Soybean | nucleus | 27.7 | 26.27 |
| KRG96403 | Soybean | nucleus | 27.82 | 26.23 |
| Solyc09g074670.2.1 | Tomato | nucleus | 27.07 | 25.87 |
| CDY54298 | Canola | nucleus | 15.14 | 25.53 |
| CDY37451 | Canola | nucleus | 16.21 | 24.78 |
| AT4G15730.1 | Thale cress | nucleus | 16.47 | 24.65 |
| CDY32489 | Canola | nucleus | 16.47 | 24.28 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 23.97 | 23.34 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.77 | 23.33 |
| Solyc06g008720.2.1 | Tomato | nucleus | 18.36 | 22.88 |
| Solyc01g067600.2.1 | Tomato | nucleus | 23.79 | 22.85 |
| Bra032575.1-P | Field mustard | nucleus | 10.09 | 22.82 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 18.86 | 22.82 |
| KRH12132 | Soybean | nucleus | 24.1 | 22.59 |
| KRH37127 | Soybean | nucleus | 23.6 | 22.34 |
| AT1G02990.4 | Thale cress | nucleus | 17.73 | 21.99 |
| KRH50884 | Soybean | nucleus | 21.89 | 21.58 |
| KRH02231 | Soybean | nucleus | 21.7 | 21.17 |
| Bra033364.1-P | Field mustard | nucleus | 15.58 | 16.06 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P21920_001 | EnsemblPlants:GSMUA_Achr8T21920_001 | EnsemblPlantsGene:GSMUA_Achr8G21920_001 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 |
| PFAM:PF07496 | PFscan:PS51050 | SEG:seg | UniParc:UPI00029499E1 | UniProt:M0TSJ5 | MapMan:35.2 |
Description
CW-type Zinc Finger, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G21920_001]
Coordinates
chr8:-:26658081..26671785
Molecular Weight (calculated)
175345.0 Da
IEP (calculated)
8.125
GRAVY (calculated)
-0.777
Length
1585 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDEENELEEG EAWSGREDDS CIDPDAFSYI DKKIQDVLGH FQKDFEAGLS AENLGAKFGG YGSFLPTYQR SPLILSQPRS AQDVPSQNVT KSPYNPSVKV
0101: TNPNVSVTMS ASCLKNNSVM VPPVDNSCKR DMCVNEPYIQ ESNSQHTSLD KPSNITDQKP LKVRIKVGSD NTLARNNVTI YSTLGLDLSS PSSFEDSPHG
0201: SIGISSEFQD LPDESPKTIF QVMTCFVVPG GLLLSPLQES LFQLVLKDNS FVNKGKRGML FQGTPEMNSD FAYYSTCSRE VKGQMEQQTK SSEHKGRPRV
0301: IKNADGKNDV NLIREIDIET QGGQELAPSS ISNNADRKAE RLMVGNTAKD DTKMLDHQWK MNEASLKGIS TFPGAVDDKP YDLIESTTNN EITNSGNEIT
0401: CSRGKLNLRA SRTEKKLEEQ NSNKQKNDNS ELQKEVRRKV DKDFGPYSNG QKRRNGQITE PADHIESNSF PHKEKAMGRK DQISDGKKKP KSRINFRSSG
0501: EFLKDNISGS SSAALKERKK NSHARTDHAE KKSNALKSHK QSSGASFREF HGNIKWDNKS EPSENEVGSQ DFHSKRKGKS MKPKHEKSVV STHTFKEKSG
0601: CKKVEETLTS GTFIDEPILT PLTCNVLATD ATVAPPAPAI INDEWVCCDI CGKWRLLPYE TNPSDLPNTW QCNMLNWLPG MNSCEIGEEE TTNALIALYL
0701: PLAPENGATL DGCHNVASSS TSFAGGLPLG QRIEVNIQNV HGTGKRKNTL KDASDMLSHS TPKCFPDTVN RGQLASVKCE ISNEANKHHP VELNSMNKVG
0801: LVNESRSSDF NREKQKIKQK YKQKNLGFYS DEDDHGRQSE KHLKLKSKRE VDQDDLGSSK KPRKEILQYS DKECSNHNLS MEAFEETGIG GCSTAGIATN
0901: ESKQRKLPMP KDLKCDSDVN SAASSKRLRD EVQFNALYVD KSNNLDLSAK KRKVKEWQEG EPNHEALVTS QHLVENEVIV KGALSESKPV KNRKALLSIP
1001: EGEGSKATKL NSKMDQKASY TMVEEHRSNQ SRGNSASPRN LEFNCLKGDM VHSQPLAAAN SSSSKVSGSR KSRSNLKETK GSPIESVSSS PSRIPRIEKP
1101: SCKRILEQNV DVINAGFSVL RSPKGCADSE VNGGSAPSGN DRKERVFSLQ HRGCKSDLGK SKLRISGSCK EMNLQSTKNS IGCRLEDSFG PCESEKGNTQ
1201: EMDEKDILRK KDVTLKWMTV RQDNISTLTV QENMNANGTS QNEKALNHPC SDRINCGELP SELGRSQLKL TSGNEQETKS WGPPLVSSPL KASKTALEVV
1301: DAVSADVLNF VKQHKQPDIR NGLHHNNLRH AAPDGPDPSS PIRKENHSVM LKEARDLKHT ANRLKSEGLE LESTALYFEA AMKFLHVAAL MEPINFDCAK
1401: QAEAGQMYFE TAKLCKFVAH EYEKIKEMAA TALAYKCVEV AYMKSAYSKR PNASKDLNEL QAAFQFLPPG ESPSSSASDV DNLNNQAILG KDASGKDGSS
1501: PQVAGNSVIA ARHHQLMWLL RYINDINCAF EATRKSHIAF EAAIVSLQKD RVDGMSYVRK ALDCNFYNIE GLLRLVRLSL ESIGR
0101: TNPNVSVTMS ASCLKNNSVM VPPVDNSCKR DMCVNEPYIQ ESNSQHTSLD KPSNITDQKP LKVRIKVGSD NTLARNNVTI YSTLGLDLSS PSSFEDSPHG
0201: SIGISSEFQD LPDESPKTIF QVMTCFVVPG GLLLSPLQES LFQLVLKDNS FVNKGKRGML FQGTPEMNSD FAYYSTCSRE VKGQMEQQTK SSEHKGRPRV
0301: IKNADGKNDV NLIREIDIET QGGQELAPSS ISNNADRKAE RLMVGNTAKD DTKMLDHQWK MNEASLKGIS TFPGAVDDKP YDLIESTTNN EITNSGNEIT
0401: CSRGKLNLRA SRTEKKLEEQ NSNKQKNDNS ELQKEVRRKV DKDFGPYSNG QKRRNGQITE PADHIESNSF PHKEKAMGRK DQISDGKKKP KSRINFRSSG
0501: EFLKDNISGS SSAALKERKK NSHARTDHAE KKSNALKSHK QSSGASFREF HGNIKWDNKS EPSENEVGSQ DFHSKRKGKS MKPKHEKSVV STHTFKEKSG
0601: CKKVEETLTS GTFIDEPILT PLTCNVLATD ATVAPPAPAI INDEWVCCDI CGKWRLLPYE TNPSDLPNTW QCNMLNWLPG MNSCEIGEEE TTNALIALYL
0701: PLAPENGATL DGCHNVASSS TSFAGGLPLG QRIEVNIQNV HGTGKRKNTL KDASDMLSHS TPKCFPDTVN RGQLASVKCE ISNEANKHHP VELNSMNKVG
0801: LVNESRSSDF NREKQKIKQK YKQKNLGFYS DEDDHGRQSE KHLKLKSKRE VDQDDLGSSK KPRKEILQYS DKECSNHNLS MEAFEETGIG GCSTAGIATN
0901: ESKQRKLPMP KDLKCDSDVN SAASSKRLRD EVQFNALYVD KSNNLDLSAK KRKVKEWQEG EPNHEALVTS QHLVENEVIV KGALSESKPV KNRKALLSIP
1001: EGEGSKATKL NSKMDQKASY TMVEEHRSNQ SRGNSASPRN LEFNCLKGDM VHSQPLAAAN SSSSKVSGSR KSRSNLKETK GSPIESVSSS PSRIPRIEKP
1101: SCKRILEQNV DVINAGFSVL RSPKGCADSE VNGGSAPSGN DRKERVFSLQ HRGCKSDLGK SKLRISGSCK EMNLQSTKNS IGCRLEDSFG PCESEKGNTQ
1201: EMDEKDILRK KDVTLKWMTV RQDNISTLTV QENMNANGTS QNEKALNHPC SDRINCGELP SELGRSQLKL TSGNEQETKS WGPPLVSSPL KASKTALEVV
1301: DAVSADVLNF VKQHKQPDIR NGLHHNNLRH AAPDGPDPSS PIRKENHSVM LKEARDLKHT ANRLKSEGLE LESTALYFEA AMKFLHVAAL MEPINFDCAK
1401: QAEAGQMYFE TAKLCKFVAH EYEKIKEMAA TALAYKCVEV AYMKSAYSKR PNASKDLNEL QAAFQFLPPG ESPSSSASDV DNLNNQAILG KDASGKDGSS
1501: PQVAGNSVIA ARHHQLMWLL RYINDINCAF EATRKSHIAF EAAIVSLQKD RVDGMSYVRK ALDCNFYNIE GLLRLVRLSL ESIGR
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.