Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU90452 | Sorghum | nucleus | 89.58 | 89.3 |
| Zm00001d007121_P024 | Maize | nucleus | 81.61 | 81.66 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 63.15 | 63.63 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 63.03 | 63.54 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 63.03 | 63.5 |
| Os07t0669800-01 | Rice | nucleus | 40.93 | 62.21 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.2 | 54.26 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.76 | 49.12 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.58 | 45.62 |
| Zm00001d029134_P004 | Maize | mitochondrion | 35.09 | 40.95 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.13 | 36.96 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 29.25 | 32.93 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 31.89 | 32.05 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.21 | 31.23 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.28 | 31.15 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 31.89 | 30.9 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.09 | 30.7 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.15 | 30.25 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.09 | 30.22 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.09 | 29.94 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 29.57 | 29.07 |
| Zm00001d010490_P005 | Maize | nucleus | 25.36 | 28.41 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.46 | 28.16 |
| CDX89924 | Canola | nucleus | 16.45 | 27.35 |
| Bra007709.1-P | Field mustard | nucleus | 22.1 | 27.14 |
| CDY11456 | Canola | nucleus | 22.1 | 27.14 |
| CDY18138 | Canola | nucleus | 16.2 | 27.1 |
| CDY37451 | Canola | nucleus | 17.64 | 27.1 |
| CDX76670 | Canola | nucleus | 21.78 | 27.0 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.46 | 26.79 |
| AT3G62900.2 | Thale cress | nucleus | 23.23 | 26.37 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.08 | 26.34 |
| CDX67908 | Canola | nucleus | 21.59 | 26.28 |
| CDY54298 | Canola | nucleus | 15.51 | 26.28 |
| Bra003514.1-P | Field mustard | nucleus | 21.78 | 26.27 |
| CDY66331 | Canola | nucleus | 15.38 | 26.18 |
| Bra033505.1-P | Field mustard | nucleus | 15.25 | 25.96 |
| KRG96403 | Soybean | nucleus | 27.24 | 25.82 |
| CDY25123 | Canola | nucleus | 21.41 | 25.81 |
| KRH68140 | Soybean | nucleus | 26.99 | 25.73 |
| CDY32489 | Canola | nucleus | 17.14 | 25.4 |
| Solyc06g008720.2.1 | Tomato | nucleus | 20.03 | 25.08 |
| Bra032575.1-P | Field mustard | nucleus | 10.86 | 24.68 |
| AT4G15730.1 | Thale cress | nucleus | 16.38 | 24.65 |
| Solyc09g074670.2.1 | Tomato | nucleus | 25.55 | 24.55 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.82 | 24.17 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.89 | 24.03 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 19.65 | 23.89 |
| Solyc01g067600.2.1 | Tomato | nucleus | 24.48 | 23.64 |
| KRH12132 | Soybean | nucleus | 24.29 | 22.89 |
| KRH37127 | Soybean | nucleus | 23.98 | 22.82 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 23.29 | 22.79 |
| KRH02231 | Soybean | nucleus | 23.23 | 22.77 |
| AT1G02990.4 | Thale cress | nucleus | 18.14 | 22.61 |
| KRH50884 | Soybean | nucleus | 22.79 | 22.57 |
| Bra033364.1-P | Field mustard | nucleus | 16.26 | 16.84 |
Protein Annotations
| EntrezGene:103633544 | Gene3D:3.30.40.100 | MapMan:35.2 | UniProt:A0A1D6IND9 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR011124 | ProteinID:ONM60755.1 | ProteinID:ONM60767.1 | ProteinID:ONM60776.1 |
| ProteinID:ONM60778.1 | ProteinID:ONM60781.1 | PFAM:PF07496 | PFscan:PS51050 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 |
| UniParc:UPI000220FF83 | EnsemblPlantsGene:Zm00001d022481 | EnsemblPlants:Zm00001d022481_P019 | EnsemblPlants:Zm00001d022481_T019 | InterPro:Znf_CW | SEG:seg |
Description
CW-type Zinc Finger
Coordinates
chr7:-:178467647..178481639
Molecular Weight (calculated)
174198.0 Da
IEP (calculated)
9.172
GRAVY (calculated)
-0.885
Length
1593 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSVRRRQED AGGRVAAAQT QQLRGGLGMD DDAELEEGEA CGDDTAFVDP DVALSYIDEK LQDVLGHFQK DFEGGVSAEN LGSKFGGYGS FLPTYQRSPL
0101: PQTRSPLKAA NATSKSPFHQ SSEGMSQKPP AVTVSSTPQS NGPMVPFSGD SIKKEIRPTT KAEGGSVSHD SYGPLKCHDQ NRLKVRIKVG SDNVLARNNA
0201: DIYSGLGLDI SSPSSIEDSP DGRGSLSPEV NNVPHESPQT ILQIMTCFSV PGGFLLSPLP ANILQLTKKV VASSKKWESN VHIESVQEPY EGHTTKKVKS
0301: DAKKKKLIDA KNSKNRNDIS AVMKKEIDIE TVAGQKIVSE ALNISLLSDP RAMDAKGENR LEVEPAENNL AGTRDARLKE RSTKTNSMPI IVEPAKAEAT
0401: ECLENSSFGS SEMDFSAVKA ESKSKAEKGE ATLEERNTTN GKDLISDRKQ EKKMKPESKY NASNFEVSNV INERGPAVSR SMGKVSGKEA LPYDTNEENS
0501: SKNEVKKMQR EQKTNASRSS DFLEDEKHIR SSAAVKERKS DMQSKSSHTG KKPKTKSHRD VRDNLPEGSH GSKEKDTLEN ESAFGDLRPK EKPWKYDIER
0601: DSDAPGISRR EISSSVKHDK HLASEEQKMH IPPPSTVSTA NAAPVVIKEH WVSCDICDKW RLLPYEMNPS DLPKKWKCSM LYWLPGMNRC EISEEETTNA
0701: LNALYVPAPA NGIPAVGHPH VASTGLVTSS TPNMNGHIEQ NRKRKNIPSD GNFVAEGSHL TQVSGHPMSN QHAPSKTKTY TDGIQYSAER HSVSKSVDPI
0801: IEKKRSKSKH HSSYSDGGDL VERPKKHSKV KNKRDLDHDE YKASKKIRKE ERHHFDVDRI LGSDLASGDV PDEAKALPAK SATSKGSGER TDLSSSKQKS
0901: ASRHNRLETS KKARQDDLVG PEDESKGYFH QSDVQRSDLS SKKRIVKEWE ESQHNSVAHV SKGAVKETYR DQNLKEAKLK SLNSEELFSM TSTKPPKVQH
1001: ADQVLSYDGG RMNSELVEDN TLFSGKRGLP EQEKSLSDQA LDLGEPASDV AYIQTSAVTS SSSKASVSQK KKQTTQAMKT SPIEPLSSSP RRNSNIDKVS
1101: VPHSRISGKD GSLNANSATV PIMAKQLNTE VRVASNDQRS SEPVSVGSPR RKSDRDNGLV QLTQGHASDG FHLERGFNED LQPESGRKDS NVKSSHIPKA
1201: SHHLHSGEKN NYNTDGSPMQ PGKHPVDPKT SVLDKCDSSM HESNKSTNSL QDRNGSTHCP PDGNPLLGLP SGKEKSYINS NKQDSQKPKP QMVCSPLKEN
1301: KLDSHSTPLK PNGSKLTPQS RQYNAQNGGR HGTAKHAIPS PADTSSPARK DNTSTAYALK EARDLKHKAN RLKGEGKELE STRLYFESAL KFLHVASLLE
1401: PPSFDGLKQG DAAQSMYSDT AKLCNFVGHA YEKCKKMAAA ALAYKCVEVA YLKAAYYKHP TASKDRQVLQ AVVQTAPGES PSSSASDIDN LNNNGLSKAS
1501: SSKDANSPQV AGNHLLLAAR NQPHLMRLLA YTNDVNSAFE ATRKSHMAIA SAAGNHENGV DGLPSVKTVL DFNFRSVNDL LRLVRISMES ISC
0101: PQTRSPLKAA NATSKSPFHQ SSEGMSQKPP AVTVSSTPQS NGPMVPFSGD SIKKEIRPTT KAEGGSVSHD SYGPLKCHDQ NRLKVRIKVG SDNVLARNNA
0201: DIYSGLGLDI SSPSSIEDSP DGRGSLSPEV NNVPHESPQT ILQIMTCFSV PGGFLLSPLP ANILQLTKKV VASSKKWESN VHIESVQEPY EGHTTKKVKS
0301: DAKKKKLIDA KNSKNRNDIS AVMKKEIDIE TVAGQKIVSE ALNISLLSDP RAMDAKGENR LEVEPAENNL AGTRDARLKE RSTKTNSMPI IVEPAKAEAT
0401: ECLENSSFGS SEMDFSAVKA ESKSKAEKGE ATLEERNTTN GKDLISDRKQ EKKMKPESKY NASNFEVSNV INERGPAVSR SMGKVSGKEA LPYDTNEENS
0501: SKNEVKKMQR EQKTNASRSS DFLEDEKHIR SSAAVKERKS DMQSKSSHTG KKPKTKSHRD VRDNLPEGSH GSKEKDTLEN ESAFGDLRPK EKPWKYDIER
0601: DSDAPGISRR EISSSVKHDK HLASEEQKMH IPPPSTVSTA NAAPVVIKEH WVSCDICDKW RLLPYEMNPS DLPKKWKCSM LYWLPGMNRC EISEEETTNA
0701: LNALYVPAPA NGIPAVGHPH VASTGLVTSS TPNMNGHIEQ NRKRKNIPSD GNFVAEGSHL TQVSGHPMSN QHAPSKTKTY TDGIQYSAER HSVSKSVDPI
0801: IEKKRSKSKH HSSYSDGGDL VERPKKHSKV KNKRDLDHDE YKASKKIRKE ERHHFDVDRI LGSDLASGDV PDEAKALPAK SATSKGSGER TDLSSSKQKS
0901: ASRHNRLETS KKARQDDLVG PEDESKGYFH QSDVQRSDLS SKKRIVKEWE ESQHNSVAHV SKGAVKETYR DQNLKEAKLK SLNSEELFSM TSTKPPKVQH
1001: ADQVLSYDGG RMNSELVEDN TLFSGKRGLP EQEKSLSDQA LDLGEPASDV AYIQTSAVTS SSSKASVSQK KKQTTQAMKT SPIEPLSSSP RRNSNIDKVS
1101: VPHSRISGKD GSLNANSATV PIMAKQLNTE VRVASNDQRS SEPVSVGSPR RKSDRDNGLV QLTQGHASDG FHLERGFNED LQPESGRKDS NVKSSHIPKA
1201: SHHLHSGEKN NYNTDGSPMQ PGKHPVDPKT SVLDKCDSSM HESNKSTNSL QDRNGSTHCP PDGNPLLGLP SGKEKSYINS NKQDSQKPKP QMVCSPLKEN
1301: KLDSHSTPLK PNGSKLTPQS RQYNAQNGGR HGTAKHAIPS PADTSSPARK DNTSTAYALK EARDLKHKAN RLKGEGKELE STRLYFESAL KFLHVASLLE
1401: PPSFDGLKQG DAAQSMYSDT AKLCNFVGHA YEKCKKMAAA ALAYKCVEVA YLKAAYYKHP TASKDRQVLQ AVVQTAPGES PSSSASDIDN LNNNGLSKAS
1501: SSKDANSPQV AGNHLLLAAR NQPHLMRLLA YTNDVNSAFE ATRKSHMAIA SAAGNHENGV DGLPSVKTVL DFNFRSVNDL LRLVRISMES ISC
0001: MFLALTQMLL SLTLMRNSKT SWDIFRKILK VEFLLKIWFG GYGSFLSMYQ RSPVCSRPKT SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH
1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE
1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH
1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE
1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.