Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.32 | 50.0 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 5.44 | 48.12 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.76 | 42.39 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 46.29 | 39.84 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 44.45 | 39.68 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.48 | 36.84 |
| PGSC0003DMT400031270 | Potato | nucleus | 7.92 | 34.89 |
| PGSC0003DMT400039039 | Potato | nucleus | 7.77 | 34.27 |
| PGSC0003DMT400039034 | Potato | nucleus | 7.63 | 34.07 |
| PGSC0003DMT400005780 | Potato | nucleus | 7.49 | 33.54 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 21.84 | 33.33 |
| Os05t0371100-00 | Rice | cytosol | 3.39 | 32.88 |
| Solyc12g017610.1.1 | Tomato | nucleus | 7.42 | 32.41 |
| Solyc08g067570.1.1 | Tomato | nucleus | 7.35 | 32.1 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 35.12 | 30.68 |
| KXG39393 | Sorghum | mitochondrion | 28.27 | 29.87 |
| Solyc08g067490.1.1 | Tomato | nucleus | 6.43 | 29.45 |
| OQU90452 | Sorghum | nucleus | 33.22 | 29.41 |
| Zm00001d022481_P019 | Maize | nucleus | 32.93 | 29.25 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 32.51 | 29.1 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 32.44 | 29.05 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 32.37 | 28.97 |
| Zm00001d007121_P024 | Maize | nucleus | 32.3 | 28.71 |
| Zm00001d029134_P004 | Maize | mitochondrion | 27.14 | 28.13 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 28.62 | 27.74 |
| Bra007709.1-P | Field mustard | nucleus | 25.09 | 27.37 |
| CDY11456 | Canola | nucleus | 25.02 | 27.29 |
| CDX76670 | Canola | nucleus | 24.59 | 27.08 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 28.06 | 27.03 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 28.06 | 27.01 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 28.06 | 26.92 |
| CDY25123 | Canola | nucleus | 25.09 | 26.87 |
| CDX67908 | Canola | nucleus | 24.73 | 26.74 |
| AT3G62900.2 | Thale cress | nucleus | 26.43 | 26.66 |
| Os07t0669800-01 | Rice | nucleus | 19.72 | 26.62 |
| Zm00001d010490_P005 | Maize | nucleus | 26.71 | 26.58 |
| OQU77880 | Sorghum | nucleus | 26.5 | 26.32 |
| Bra003514.1-P | Field mustard | nucleus | 24.38 | 26.12 |
| CDY18138 | Canola | nucleus | 17.53 | 26.05 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.88 | 26.04 |
| KRG96403 | Soybean | nucleus | 30.67 | 25.82 |
| CDX89924 | Canola | nucleus | 17.46 | 25.78 |
| PGSC0003DMT400005776 | Potato | nucleus | 4.66 | 25.58 |
| Solyc09g074670.2.1 | Tomato | nucleus | 29.68 | 25.33 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.32 | 25.27 |
| KRH68140 | Soybean | nucleus | 29.82 | 25.25 |
| CDY54298 | Canola | nucleus | 16.54 | 24.89 |
| CDY66331 | Canola | nucleus | 16.47 | 24.89 |
| Bra033505.1-P | Field mustard | nucleus | 16.47 | 24.89 |
| AT4G15730.1 | Thale cress | nucleus | 18.09 | 24.17 |
| CDY37451 | Canola | nucleus | 17.39 | 23.72 |
| CDY32489 | Canola | nucleus | 17.67 | 23.26 |
| Bra032575.1-P | Field mustard | nucleus | 11.52 | 23.25 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 26.71 | 23.22 |
| Solyc06g008720.2.1 | Tomato | nucleus | 20.85 | 23.19 |
| Solyc01g067600.2.1 | Tomato | nucleus | 26.64 | 22.85 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 21.13 | 22.82 |
| KRH50884 | Soybean | nucleus | 25.94 | 22.82 |
| KRH37127 | Soybean | nucleus | 26.86 | 22.7 |
| KRH12132 | Soybean | nucleus | 27.07 | 22.65 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.91 | 22.5 |
| AT1G02990.4 | Thale cress | nucleus | 20.28 | 22.46 |
| KRH02231 | Soybean | nucleus | 25.23 | 21.97 |
| Bra033364.1-P | Field mustard | nucleus | 16.25 | 14.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P08000_001 | EnsemblPlants:GSMUA_Achr5T08000_001 | EnsemblPlantsGene:GSMUA_Achr5G08000_001 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 |
| PFAM:PF07496 | PFscan:PS51050 | SEG:seg | UniParc:UPI0002957F77 | UniProt:M0SWM9 | MapMan:35.2 |
Description
CW-type Zinc Finger, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G08000_001]
Coordinates
chr5:-:5770795..5783364
Molecular Weight (calculated)
155946.0 Da
IEP (calculated)
7.843
GRAVY (calculated)
-0.812
Length
1415 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDEDNELEEG EACSGQEDDP SIDPDALSYI DEKIQDVLGH FQKDFEAGVS AENLGAKFGG YGSFLPTHQR SPSILCQPRS PQKLPNQNVT RSPYKSTVEV
0101: TNQDNSVTMS SPFPRNNTVA VSLLDNSYKT DSCVNKPNVQ EPSSECSSFN KTTNGTDHKT LKVRIKMVDN NLARNNAAIY SGLGLDYSPS SSFEDSPDGN
0201: EGVFPGFRDL PDESPGTIIQ VMTCFAVPGG FLLSPLQDNL FHLTEKDISY IKQSKRHKSY KGLPETTIDF ADSTTHSREV KGQMKQTKAR GQQGRPSEIK
0301: DSEGKDNITF GREIESETHS GREPTSSSFN MPASSISKNA IKEARPIVGN AVKIDTKLLD QPSEMKKTSL KDQSSFTERN KDYLKDKKSD LQRDQRSNIE
0401: KDLDITDTHS SGHKRSNEQV SVPTDRFKPG SSPSRERILQ QKEQRSDRKK KLKVSHTNSE PFGEILKDNH EKKPIVSTQA SKEMSGCNKV EDTPISGAFV
0501: IEPILAPLAC NAPVTDATVA PQPPVVIEEH WVCCDICQKW RLLPYGTNPG HLPTKWQCKL LNWLPGMNRC DVSEEETTNA LHALYLAPAP ENGASLDGRD
0601: VAAPSASLTS GDASSIPTHS TPTQIPNFAK KDEQAFVKSR SSNDTNLCLH SEIDSSSKGG LGNTSRLTDF GVEKHKPKQK DKHKNRRGNS DGGDHSGKNK
0701: KHSKSENQRG IDQDDLRTSK KAGKESLQYT NKSCTSDNVT AKAFEVTDVG GYSTKVITND HTRWDNNPFL KDSKCDTKSN SSAPFKKSRD EVQSITNCES
0801: KDHVSASDVE KYSNLDVSSQ ENAASLRELD FDSLKRDIAY AQPPVAANSS SSMVSGSHKS RSNLRETKGS PVESVSSSPL RILGIQKPSC KRTSEQKDYA
0901: INPDSSLLES PKRCSDGEIQ LSVGKSEERL HAKNGASDDF SPTELGEQHP YKYDIQDLGK VNKDHLVNES SQRKSSKSSL SSKGKHRGSK SDLGKNKLRV
1001: SGPYTVNKDF HSTNNGSSCR FEATSGYLQD NMDANAPIMH SSQQKDIESK VPVCGSRHIK PEFQVKPSFH NGKELDHNHF DRIDFPELPS GLGKSQLKLT
1101: AGCKQDTQYR IPHMVSSPLK ASRLDVGIVD AVNADASKVV KQHRQPEIHH RSHQTNMRHA TPSGPDTSSP LRKEHYSAVM KEARDLKHSA NRLKSEGLEL
1201: ESTGLYFEAA LKFLHVAALM EPVNLDSVKQ AEAAQMYFET AKLCEFVAHE YEKVKDTAAA ALAYKCVEVA HLKSAYCKNP NASKDRHELQ AALQFLPPGE
1301: SPSSSASDVD NLNNQIILGK NASTKAVSSP QVAGSHVIAA RHHHQVMRLL HYTNYLNCAF EATRKAHICL AAAVDSFGKD RVDCLSSVRK ALNFNFHNVD
1401: GLLRHVRLSL DSIGR
0101: TNQDNSVTMS SPFPRNNTVA VSLLDNSYKT DSCVNKPNVQ EPSSECSSFN KTTNGTDHKT LKVRIKMVDN NLARNNAAIY SGLGLDYSPS SSFEDSPDGN
0201: EGVFPGFRDL PDESPGTIIQ VMTCFAVPGG FLLSPLQDNL FHLTEKDISY IKQSKRHKSY KGLPETTIDF ADSTTHSREV KGQMKQTKAR GQQGRPSEIK
0301: DSEGKDNITF GREIESETHS GREPTSSSFN MPASSISKNA IKEARPIVGN AVKIDTKLLD QPSEMKKTSL KDQSSFTERN KDYLKDKKSD LQRDQRSNIE
0401: KDLDITDTHS SGHKRSNEQV SVPTDRFKPG SSPSRERILQ QKEQRSDRKK KLKVSHTNSE PFGEILKDNH EKKPIVSTQA SKEMSGCNKV EDTPISGAFV
0501: IEPILAPLAC NAPVTDATVA PQPPVVIEEH WVCCDICQKW RLLPYGTNPG HLPTKWQCKL LNWLPGMNRC DVSEEETTNA LHALYLAPAP ENGASLDGRD
0601: VAAPSASLTS GDASSIPTHS TPTQIPNFAK KDEQAFVKSR SSNDTNLCLH SEIDSSSKGG LGNTSRLTDF GVEKHKPKQK DKHKNRRGNS DGGDHSGKNK
0701: KHSKSENQRG IDQDDLRTSK KAGKESLQYT NKSCTSDNVT AKAFEVTDVG GYSTKVITND HTRWDNNPFL KDSKCDTKSN SSAPFKKSRD EVQSITNCES
0801: KDHVSASDVE KYSNLDVSSQ ENAASLRELD FDSLKRDIAY AQPPVAANSS SSMVSGSHKS RSNLRETKGS PVESVSSSPL RILGIQKPSC KRTSEQKDYA
0901: INPDSSLLES PKRCSDGEIQ LSVGKSEERL HAKNGASDDF SPTELGEQHP YKYDIQDLGK VNKDHLVNES SQRKSSKSSL SSKGKHRGSK SDLGKNKLRV
1001: SGPYTVNKDF HSTNNGSSCR FEATSGYLQD NMDANAPIMH SSQQKDIESK VPVCGSRHIK PEFQVKPSFH NGKELDHNHF DRIDFPELPS GLGKSQLKLT
1101: AGCKQDTQYR IPHMVSSPLK ASRLDVGIVD AVNADASKVV KQHRQPEIHH RSHQTNMRHA TPSGPDTSSP LRKEHYSAVM KEARDLKHSA NRLKSEGLEL
1201: ESTGLYFEAA LKFLHVAALM EPVNLDSVKQ AEAAQMYFET AKLCEFVAHE YEKVKDTAAA ALAYKCVEVA HLKSAYCKNP NASKDRHELQ AALQFLPPGE
1301: SPSSSASDVD NLNNQIILGK NASTKAVSSP QVAGSHVIAA RHHHQVMRLL HYTNYLNCAF EATRKAHICL AAAVDSFGKD RVDCLSSVRK ALNFNFHNVD
1401: GLLRHVRLSL DSIGR
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.