Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66331 | Canola | nucleus | 47.5 | 53.74 |
| Bra033505.1-P | Field mustard | nucleus | 47.12 | 53.31 |
| CDY54298 | Canola | nucleus | 46.93 | 52.87 |
| PGSC0003DMT400005780 | Potato | nucleus | 7.74 | 25.95 |
| PGSC0003DMT400039034 | Potato | nucleus | 7.74 | 25.87 |
| PGSC0003DMT400039039 | Potato | nucleus | 7.65 | 25.23 |
| Solyc12g017610.1.1 | Tomato | nucleus | 7.55 | 24.69 |
| Os05t0371100-00 | Rice | cytosol | 3.4 | 24.66 |
| Solyc08g067570.1.1 | Tomato | nucleus | 7.46 | 24.38 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.08 | 23.91 |
| PGSC0003DMT400031270 | Potato | nucleus | 7.18 | 23.68 |
| Solyc08g067590.1.1 | Tomato | nucleus | 2.64 | 23.33 |
| Solyc08g067490.1.1 | Tomato | nucleus | 6.7 | 22.98 |
| Solyc08g067140.1.1 | Tomato | nucleus | 5.38 | 21.51 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.68 | 20.97 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 16.24 | 18.55 |
| KRH50884 | Soybean | nucleus | 28.05 | 18.47 |
| AT3G62900.2 | Thale cress | nucleus | 24.08 | 18.18 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 24.17 | 18.09 |
| KRH02231 | Soybean | nucleus | 27.2 | 17.72 |
| KXG39393 | Sorghum | mitochondrion | 21.91 | 17.33 |
| KRH37127 | Soybean | nucleus | 27.2 | 17.2 |
| KRH12132 | Soybean | nucleus | 27.2 | 17.03 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 25.4 | 17.03 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 25.4 | 17.01 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 25.4 | 17.01 |
| OQU77880 | Sorghum | nucleus | 22.38 | 16.63 |
| Zm00001d029134_P004 | Maize | mitochondrion | 21.44 | 16.63 |
| Zm00001d010490_P005 | Maize | nucleus | 22.19 | 16.53 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 22.76 | 16.51 |
| Solyc01g067600.2.1 | Tomato | nucleus | 25.68 | 16.48 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 24.65 | 16.47 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 25.31 | 16.46 |
| Zm00001d007121_P024 | Maize | nucleus | 24.74 | 16.46 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 22.76 | 16.39 |
| Zm00001d022481_P019 | Maize | nucleus | 24.65 | 16.38 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 22.66 | 16.34 |
| OQU90452 | Sorghum | nucleus | 24.55 | 16.27 |
| AT1G02990.4 | Thale cress | nucleus | 19.45 | 16.12 |
| Os07t0669800-01 | Rice | nucleus | 15.86 | 16.03 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 22.29 | 16.0 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 24.74 | 15.94 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.78 | 15.5 |
Protein Annotations
| Gene3D:3.30.40.100 | MapMan:35.2 | EntrezGene:827251 | ProteinID:AEE83641.1 | EMBL:AK117862 | ArrayExpress:AT4G15730 |
| EnsemblPlantsGene:AT4G15730 | RefSeq:AT4G15730 | TAIR:AT4G15730 | RefSeq:AT4G15730-TAIR-G | EnsemblPlants:AT4G15730.1 | TAIR:AT4G15730.1 |
| Unigene:At.33147 | EMBL:BT006487 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008270 | GO:GO:0009506 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR011124 | RefSeq:NP_193308.2 |
| PFAM:PF07496 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0001078 | PO:PO:0004507 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PFscan:PS51050 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF47 |
| UniProt:Q8GY51 | UniParc:UPI00000ADE30 | InterPro:Znf_CW | SEG:seg | : | : |
Description
At4g15730 [Source:UniProtKB/TrEMBL;Acc:Q8GY51]
Coordinates
chr4:-:8951533..8957665
Molecular Weight (calculated)
116704.0 Da
IEP (calculated)
8.673
GRAVY (calculated)
-0.628
Length
1059 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGEDYELEEG EMNCSSDEAV VDLDVDLSYI DKKVQNVLGH LQKGFGEEAR DRFGPEIFDY GSFLPTYKRL PAVPSCQRSS LGNHAVQRIS NSLPGKNVVQ
0101: KFQSPPATSC KLVRNQDPQN YQTSGSLLAQ APGKVPINKG NARTPANDLP HNKPIRVRIK MGSEILSQSV AMVCKDLGLD GSPNSPPRIS QDDSSRMLPH
0201: TSLGKTSESP SRILQEMTAI SVPEDLLMSP LPDSLLLVKD KKKQYTLLDN QPMIKTGKKS SIQIQNKFSD VLCCEKTPIG RRRKEVDCFH ATTWNETKKH
0301: KVLSTGQLAR DNSACGLGGA SLTTDGFTTK SNLQEGCRKD GESDPRVANK IKFVGLHAVK EKKTCPTKLQ QNRSKYRIGD KVLSKMPLKD AAYIGHNSMD
0401: TGFDFAVAPS STSVDLDYWA QCESCEKWRL LPYDLNTEKL PDKWLCSMQT WLPGMNHCGV SEEETTNAIK SFHASEGHGP DTGVKLLSDV RNADKIYQPL
0501: TSGSLPNPIE KKSNVEDLSQ GVSSNILVDA AKPMRSNPHI FKNKNMKLPG ETPTATQISA DLSHDFFQDK IDQKAKRRAA GAGCQIKVKK KKEADKEESD
0601: GSKHIKTGDG NKLARVIKAE EIHWNQDPKW TPAERKRKRH DNDFCTLNVE RDPKKRLLVS KKKPDHKPQL ITASGSLCTK AQGNINSTVR KIRLMGYKQG
0701: KDGKNSKLFA DGEENEPSME KAVTTKISVH ESKANQRNEL FQADCFQEHL NGDASCRYFS GGSGQISGIE TSNSSKVLGS HKSGRMYVEE VKASPVESVS
0801: SSPARSSCPT NDILQEAEKL RKLADCFKSS GFEYEYKEIN FKAALRFLLG ASVLEMCSTD NVEVGKMSHI EAYHTAAKLS ESCAHQYETS QEMAAATLAY
0901: KCTEVACMRL VYGRSLGLSG EWNELQKMVQ MTPQGESPSS SASDVDSFNH QGVIKKSAKT RRGLSHVAGN LLPVARSQLN FVPLLDFTGS MNLAMEASAK
1001: SQNAFKAVTD TSEERKHGDC ISAIKKVVDF SFHDVEALIK MIEVAMDALS SSRFGGPKC
0101: KFQSPPATSC KLVRNQDPQN YQTSGSLLAQ APGKVPINKG NARTPANDLP HNKPIRVRIK MGSEILSQSV AMVCKDLGLD GSPNSPPRIS QDDSSRMLPH
0201: TSLGKTSESP SRILQEMTAI SVPEDLLMSP LPDSLLLVKD KKKQYTLLDN QPMIKTGKKS SIQIQNKFSD VLCCEKTPIG RRRKEVDCFH ATTWNETKKH
0301: KVLSTGQLAR DNSACGLGGA SLTTDGFTTK SNLQEGCRKD GESDPRVANK IKFVGLHAVK EKKTCPTKLQ QNRSKYRIGD KVLSKMPLKD AAYIGHNSMD
0401: TGFDFAVAPS STSVDLDYWA QCESCEKWRL LPYDLNTEKL PDKWLCSMQT WLPGMNHCGV SEEETTNAIK SFHASEGHGP DTGVKLLSDV RNADKIYQPL
0501: TSGSLPNPIE KKSNVEDLSQ GVSSNILVDA AKPMRSNPHI FKNKNMKLPG ETPTATQISA DLSHDFFQDK IDQKAKRRAA GAGCQIKVKK KKEADKEESD
0601: GSKHIKTGDG NKLARVIKAE EIHWNQDPKW TPAERKRKRH DNDFCTLNVE RDPKKRLLVS KKKPDHKPQL ITASGSLCTK AQGNINSTVR KIRLMGYKQG
0701: KDGKNSKLFA DGEENEPSME KAVTTKISVH ESKANQRNEL FQADCFQEHL NGDASCRYFS GGSGQISGIE TSNSSKVLGS HKSGRMYVEE VKASPVESVS
0801: SSPARSSCPT NDILQEAEKL RKLADCFKSS GFEYEYKEIN FKAALRFLLG ASVLEMCSTD NVEVGKMSHI EAYHTAAKLS ESCAHQYETS QEMAAATLAY
0901: KCTEVACMRL VYGRSLGLSG EWNELQKMVQ MTPQGESPSS SASDVDSFNH QGVIKKSAKT RRGLSHVAGN LLPVARSQLN FVPLLDFTGS MNLAMEASAK
1001: SQNAFKAVTD TSEERKHGDC ISAIKKVVDF SFHDVEALIK MIEVAMDALS SSRFGGPKC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.