Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g078360.2.1 | |
| Solyc06g009750.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15730.1 | Solyc06g009750.2.1 | AT4G02150.1 | 21798944 |
| AT4G15730.1 | Solyc02g078360.2.1 | AT4G04950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039039 | Potato | nucleus | 90.74 | 91.59 |
| PGSC0003DMT400039034 | Potato | nucleus | 87.65 | 89.59 |
| Solyc08g067570.1.1 | Tomato | nucleus | 89.51 | 89.51 |
| PGSC0003DMT400005780 | Potato | nucleus | 87.04 | 89.24 |
| Solyc08g067590.1.1 | Tomato | nucleus | 27.47 | 74.17 |
| Solyc08g067140.1.1 | Tomato | nucleus | 50.62 | 61.89 |
| Solyc08g067490.1.1 | Tomato | nucleus | 49.38 | 51.78 |
| Os05t0371100-00 | Rice | cytosol | 9.57 | 21.23 |
| Os07t0669800-01 | Rice | nucleus | 30.56 | 9.45 |
| Bra033505.1-P | Field mustard | nucleus | 24.38 | 8.44 |
| CDY66331 | Canola | nucleus | 24.38 | 8.44 |
| CDY54298 | Canola | nucleus | 23.77 | 8.19 |
| Solyc01g067600.2.1 | Tomato | nucleus | 38.89 | 7.64 |
| AT4G15730.1 | Thale cress | nucleus | 24.69 | 7.55 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 32.41 | 7.42 |
| KXG39393 | Sorghum | mitochondrion | 29.32 | 7.09 |
| Zm00001d029134_P004 | Maize | mitochondrion | 29.01 | 6.89 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 33.64 | 6.88 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 19.14 | 6.69 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 31.79 | 6.52 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 31.79 | 6.51 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 31.79 | 6.51 |
| KRH37127 | Soybean | nucleus | 32.72 | 6.33 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 28.09 | 6.23 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 28.09 | 6.19 |
| Zm00001d022481_P019 | Maize | nucleus | 30.25 | 6.15 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 31.17 | 6.14 |
| OQU90452 | Sorghum | nucleus | 30.25 | 6.13 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 27.78 | 6.13 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 27.47 | 6.03 |
| Zm00001d007121_P024 | Maize | nucleus | 29.63 | 6.03 |
| KRH12132 | Soybean | nucleus | 30.86 | 5.91 |
| Solyc09g074670.2.1 | Tomato | nucleus | 30.25 | 5.91 |
| KRH02231 | Soybean | nucleus | 29.32 | 5.85 |
| OQU77880 | Sorghum | nucleus | 25.31 | 5.75 |
| KRH50884 | Soybean | nucleus | 28.4 | 5.72 |
| Zm00001d010490_P005 | Maize | nucleus | 24.07 | 5.49 |
| Solyc06g008720.2.1 | Tomato | nucleus | 20.06 | 5.11 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 23.15 | 4.61 |
Protein Annotations
| EnsemblPlants:Solyc12g017610.1.1 | EnsemblPlantsGene:Solyc12g017610.1 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 | PFscan:PS51050 |
| SEG:seg | UniParc:UPI000276941D | UniProt:K4DD92 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr12:+:6985824..6986798
Molecular Weight (calculated)
36372.1 Da
IEP (calculated)
9.417
GRAVY (calculated)
-0.775
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEHDIEEG EIYDDSHINI DAKLQTVLGN YTKDFEGTVS AEKLGPKFGV YGSFLSIDQL VVQPQISQKL PSPTPISSHQ PIRIRIKLRS SNTAAPKCSD
101: SHTTSVKTHC PELTTSGKES PLAPFIIQED WIQCSTCRKR RLLPYGTKPN QLSQSWVCTM LDWLPGMNCC DISEDDTTSA LHALYQSLIQ SNFQNRGSKG
201: TSIDLKAHNG REVSVKKRKS REQDYLGNEL GESDANAFES KFRKQKKSKV IQTEIKKSSR SKGEGKSTSR DRGIKDSAPI EREQQTNKYG VKQQSQAECG
301: MMRKPVYKKA IGYGKVARPY IAFW
101: SHTTSVKTHC PELTTSGKES PLAPFIIQED WIQCSTCRKR RLLPYGTKPN QLSQSWVCTM LDWLPGMNCC DISEDDTTSA LHALYQSLIQ SNFQNRGSKG
201: TSIDLKAHNG REVSVKKRKS REQDYLGNEL GESDANAFES KFRKQKKSKV IQTEIKKSSR SKGEGKSTSR DRGIKDSAPI EREQQTNKYG VKQQSQAECG
301: MMRKPVYKKA IGYGKVARPY IAFW
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.