Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G116600.1 | Wheat | nucleus | 98.23 | 98.23 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 98.17 | 98.23 |
| OQU90452 | Sorghum | nucleus | 64.58 | 63.89 |
| Zm00001d022481_P019 | Maize | nucleus | 63.5 | 63.03 |
| Os07t0669800-01 | Rice | nucleus | 40.35 | 60.88 |
| Zm00001d007121_P024 | Maize | nucleus | 60.03 | 59.61 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.23 | 54.26 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.77 | 49.12 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.62 | 45.62 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.21 | 38.04 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.58 | 32.81 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 28.97 | 32.37 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.51 | 32.09 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.39 | 31.96 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.51 | 31.79 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.45 | 31.78 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.33 | 30.86 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 30.36 | 30.28 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 27.89 | 30.21 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 31.31 | 30.11 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 29.16 | 28.46 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.44 | 27.83 |
| Bra007709.1-P | Field mustard | nucleus | 22.64 | 27.6 |
| CDY11456 | Canola | nucleus | 22.58 | 27.53 |
| CDX76670 | Canola | nucleus | 22.2 | 27.32 |
| CDY66331 | Canola | nucleus | 16.07 | 27.14 |
| Bra033505.1-P | Field mustard | nucleus | 15.94 | 26.92 |
| CDY37451 | Canola | nucleus | 17.39 | 26.52 |
| CDX89924 | Canola | nucleus | 16.07 | 26.51 |
| CDY54298 | Canola | nucleus | 15.75 | 26.49 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.43 | 26.42 |
| AT3G62900.2 | Thale cress | nucleus | 23.4 | 26.37 |
| KRG96403 | Soybean | nucleus | 27.7 | 26.06 |
| PGSC0003DMT400005776 | Potato | nucleus | 4.24 | 25.97 |
| Bra003514.1-P | Field mustard | nucleus | 21.7 | 25.97 |
| CDX67908 | Canola | nucleus | 21.44 | 25.9 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.96 | 25.83 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.04 | 25.81 |
| KRH68140 | Soybean | nucleus | 27.2 | 25.73 |
| CDY18138 | Canola | nucleus | 15.43 | 25.63 |
| CDY25123 | Canola | nucleus | 21.38 | 25.59 |
| Solyc09g074670.2.1 | Tomato | nucleus | 26.76 | 25.51 |
| AT4G15730.1 | Thale cress | nucleus | 17.01 | 25.4 |
| CDY32489 | Canola | nucleus | 16.95 | 24.93 |
| Solyc06g008720.2.1 | Tomato | nucleus | 19.8 | 24.61 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 20.18 | 24.35 |
| Solyc01g067600.2.1 | Tomato | nucleus | 24.79 | 23.76 |
| KRH37127 | Soybean | nucleus | 24.92 | 23.54 |
| Bra032575.1-P | Field mustard | nucleus | 10.31 | 23.25 |
| KRH12132 | Soybean | nucleus | 24.86 | 23.24 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 23.66 | 22.97 |
| KRH02231 | Soybean | nucleus | 23.09 | 22.46 |
| KRH50884 | Soybean | nucleus | 22.83 | 22.45 |
| AT1G02990.4 | Thale cress | nucleus | 17.77 | 21.99 |
| Bra033364.1-P | Field mustard | nucleus | 15.81 | 16.25 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G135800.1 | EnsemblPlantsGene:TraesCS2B01G135800 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 |
| PFscan:PS51050 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:102418549..102426813
Molecular Weight (calculated)
171865.0 Da
IEP (calculated)
8.950
GRAVY (calculated)
-0.895
Length
1581 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSVRRRQED AGGAAGMADH AELEEGEAYG DDMPPFDDPD VTLAYIDEKL QNVLGHFQKD FEGGVSAENL GSKFGGYGSF LPTYQRSPLL PHTRTPPKVA
0101: NASSRSPYHQ STEDVSQNPP AMAVPSVSQN NGSVAPFSGD SIKKERCEST ASKRGSGTHD PSNGPSKSSD QNRFKVRIKV GSDNVLARNN AAIYSGLGLD
0201: ISSPSSVEES PDGHGGLSPE FSNVQLESPR TILQIMTCFS VPGGYLLSPL HGSLLQLTKK VVPSLKKWET SLEIENAQEA YEGHVVKKMK SDGKKKKPTD
0301: VKRSNNRNDV SAFMKNEIDV ETLAGQKIAS EALSIPSSPR GMDANSNCQF EEEATGKSLE RNKDDRLKEW AVNSNSKTIK AETGKEETTD CLASGGFGSS
0401: ELELSAAKRE LKPVTEKTAL TLEEMNTTSD TDFLLDRKHE RKIKPESKSN ASVVNFEENA VIDEKAPAVC RSMEKVTSKE ASLYDTNVKN NTKSDAKRIH
0501: REQKKNAPTS SDLLDVDKGA RSSGGVKERK NDSHSKSSHS GKKPKAKPHR DVRDSLPDGS HGSREQDILE NGVGLGELQP KEKYWIKRDS DLAGASKREI
0601: SSSAKHDRHT ASEEQKMHVP PSSVSTANAA PALQAPVVIE EHWVQCDICQ KWRLLPYESD PDTLPKEWKC SMQLWLPGMN RCDVGEEETT NALNALYVIP
0701: PPANGIPSVG HPHAASSGLA TANTFSINGH AEQSRKRKSF PGDGSALVDS SHPTQASAYS TITQPPPRVR STADTNHYPS ERDSVSKSVD VSTEKKKSKS
0801: KNRGSYSDGG DLVERSKKHS KGKGKREMDY GEYKASKKVK KEERHRSSRD RNPECDLASG DVPDEAKAFL AKAKSLGEKG DISSLKQKSV ARSDRLEKSK
0901: RDKDEDIALP EDRNKEQYQT SDVQRSDVSS KKRIVKEWEE SQHSSIAQVS RGTTVNHSSA AKETHKDQNL KETKSKPIKS EELYSTTDSK LGKGLHSNQI
1001: SSYYGGHVNN ELVEDSTHFA GKRGPSEVLD KRSSEHALDL AGAASSDVPT TAIASSSSKA SGSQKKKNNS QVAKTSPIES VSSSPPRNSN IDKFSQNRIV
1101: EKDGPMNANP GTMPSSVKYL NTEVDIVDNV RQAKKSKESL LASEPVLHGS SQGNSDKDDE LVQSTQGHAS ERFSLRKGLD DDQQHASGRK DSTVNGSSTA
1201: RGYNHLHSGD KNNLRTDGSL VQPRTAASGS KGDLIASESK KTAAPIQDRN GLTHCALDGN PKPEVPSGKD KSYPKSNKQD MEKPKAQIAP SPLKETHSTP
1301: VKSNASKLTP QSRRSSDENG GQQRVAKQGT SNPTDGKDGN STAYALKEAR DLKHKANRLK KEGKELESTR LYFEAALKFL HVASLLEPPG IDGLKQGDAA
1401: QSMYSDTAKL CNFVGHEYER CKKMAAAALA YKCVEVAYLK AAYYKYPIAS KDRQVLQAVV QTTPGESPSS SASDIDNLNN NGLSKMAPSN KDANSPQIAG
1501: NHLLLAVRNQ PHLTRLLAYT NDVNSAFEAT RKSQMAIASA AGNHEKGVDG LSSVKTVLDF NFRSVNDLLR LVRISMESIS C
0101: NASSRSPYHQ STEDVSQNPP AMAVPSVSQN NGSVAPFSGD SIKKERCEST ASKRGSGTHD PSNGPSKSSD QNRFKVRIKV GSDNVLARNN AAIYSGLGLD
0201: ISSPSSVEES PDGHGGLSPE FSNVQLESPR TILQIMTCFS VPGGYLLSPL HGSLLQLTKK VVPSLKKWET SLEIENAQEA YEGHVVKKMK SDGKKKKPTD
0301: VKRSNNRNDV SAFMKNEIDV ETLAGQKIAS EALSIPSSPR GMDANSNCQF EEEATGKSLE RNKDDRLKEW AVNSNSKTIK AETGKEETTD CLASGGFGSS
0401: ELELSAAKRE LKPVTEKTAL TLEEMNTTSD TDFLLDRKHE RKIKPESKSN ASVVNFEENA VIDEKAPAVC RSMEKVTSKE ASLYDTNVKN NTKSDAKRIH
0501: REQKKNAPTS SDLLDVDKGA RSSGGVKERK NDSHSKSSHS GKKPKAKPHR DVRDSLPDGS HGSREQDILE NGVGLGELQP KEKYWIKRDS DLAGASKREI
0601: SSSAKHDRHT ASEEQKMHVP PSSVSTANAA PALQAPVVIE EHWVQCDICQ KWRLLPYESD PDTLPKEWKC SMQLWLPGMN RCDVGEEETT NALNALYVIP
0701: PPANGIPSVG HPHAASSGLA TANTFSINGH AEQSRKRKSF PGDGSALVDS SHPTQASAYS TITQPPPRVR STADTNHYPS ERDSVSKSVD VSTEKKKSKS
0801: KNRGSYSDGG DLVERSKKHS KGKGKREMDY GEYKASKKVK KEERHRSSRD RNPECDLASG DVPDEAKAFL AKAKSLGEKG DISSLKQKSV ARSDRLEKSK
0901: RDKDEDIALP EDRNKEQYQT SDVQRSDVSS KKRIVKEWEE SQHSSIAQVS RGTTVNHSSA AKETHKDQNL KETKSKPIKS EELYSTTDSK LGKGLHSNQI
1001: SSYYGGHVNN ELVEDSTHFA GKRGPSEVLD KRSSEHALDL AGAASSDVPT TAIASSSSKA SGSQKKKNNS QVAKTSPIES VSSSPPRNSN IDKFSQNRIV
1101: EKDGPMNANP GTMPSSVKYL NTEVDIVDNV RQAKKSKESL LASEPVLHGS SQGNSDKDDE LVQSTQGHAS ERFSLRKGLD DDQQHASGRK DSTVNGSSTA
1201: RGYNHLHSGD KNNLRTDGSL VQPRTAASGS KGDLIASESK KTAAPIQDRN GLTHCALDGN PKPEVPSGKD KSYPKSNKQD MEKPKAQIAP SPLKETHSTP
1301: VKSNASKLTP QSRRSSDENG GQQRVAKQGT SNPTDGKDGN STAYALKEAR DLKHKANRLK KEGKELESTR LYFEAALKFL HVASLLEPPG IDGLKQGDAA
1401: QSMYSDTAKL CNFVGHEYER CKKMAAAALA YKCVEVAYLK AAYYKYPIAS KDRQVLQAVV QTTPGESPSS SASDIDNLNN NGLSKMAPSN KDANSPQIAG
1501: NHLLLAVRNQ PHLTRLLAYT NDVNSAFEAT RKSQMAIASA AGNHEKGVDG LSSVKTVLDF NFRSVNDLLR LVRISMESIS C
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.