Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022481_P019 | Maize | nucleus | 81.66 | 81.61 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 59.67 | 60.09 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 59.61 | 60.06 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 59.61 | 60.03 |
| Os07t0669800-01 | Rice | nucleus | 39.2 | 59.54 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.02 | 51.06 |
| Zm00001d029134_P004 | Maize | mitochondrion | 33.35 | 38.9 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 3.89 | 38.75 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.01 | 34.78 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.19 | 33.33 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 28.71 | 32.3 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.16 | 30.91 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 30.4 | 30.54 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.03 | 30.38 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.09 | 30.22 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.03 | 29.63 |
| PGSC0003DMT400039039 | Potato | nucleus | 5.97 | 29.59 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 30.15 | 29.2 |
| Solyc08g067570.1.1 | Tomato | nucleus | 5.9 | 29.01 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 28.33 | 27.84 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.4 | 27.83 |
| Zm00001d010490_P005 | Maize | nucleus | 24.56 | 27.5 |
| CDY66331 | Canola | nucleus | 15.89 | 27.03 |
| Bra033505.1-P | Field mustard | nucleus | 15.83 | 26.92 |
| CDY54298 | Canola | nucleus | 15.89 | 26.91 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.46 | 26.79 |
| Bra007709.1-P | Field mustard | nucleus | 21.61 | 26.52 |
| CDY11456 | Canola | nucleus | 21.61 | 26.52 |
| CDX89924 | Canola | nucleus | 15.77 | 26.2 |
| CDX76670 | Canola | nucleus | 21.04 | 26.07 |
| Bra003514.1-P | Field mustard | nucleus | 21.61 | 26.04 |
| CDX67908 | Canola | nucleus | 21.36 | 25.97 |
| CDY18138 | Canola | nucleus | 15.52 | 25.95 |
| CDY37451 | Canola | nucleus | 16.83 | 25.84 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.02 | 25.81 |
| AT3G62900.2 | Thale cress | nucleus | 22.74 | 25.8 |
| CDY25123 | Canola | nucleus | 21.36 | 25.74 |
| KRG96403 | Soybean | nucleus | 26.38 | 24.99 |
| KRH68140 | Soybean | nucleus | 26.07 | 24.84 |
| AT4G15730.1 | Thale cress | nucleus | 16.46 | 24.74 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.82 | 24.17 |
| CDY32489 | Canola | nucleus | 16.27 | 24.09 |
| Solyc09g074670.2.1 | Tomato | nucleus | 25.0 | 24.0 |
| Solyc06g008720.2.1 | Tomato | nucleus | 19.1 | 23.9 |
| Bra032575.1-P | Field mustard | nucleus | 10.3 | 23.4 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 18.84 | 22.9 |
| Solyc01g067600.2.1 | Tomato | nucleus | 23.68 | 22.85 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 23.18 | 22.67 |
| KRH12132 | Soybean | nucleus | 24.0 | 22.59 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.64 | 22.48 |
| KRH37127 | Soybean | nucleus | 23.62 | 22.46 |
| KRH02231 | Soybean | nucleus | 22.8 | 22.34 |
| AT1G02990.4 | Thale cress | nucleus | 17.65 | 21.99 |
| KRH50884 | Soybean | nucleus | 22.17 | 21.95 |
| Bra033364.1-P | Field mustard | nucleus | 15.45 | 15.99 |
Protein Annotations
| EnsemblPlants:Zm00001d007121_P024 | EnsemblPlants:Zm00001d007121_T024 | EnsemblPlantsGene:Zm00001d007121 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 |
| PFAM:PF07496 | PFscan:PS51050 | ProteinID:ONM26058.1 | SEG:seg | UniParc:UPI0008432473 | UniProt:A0A1D6F3Z3 |
| MapMan:35.2 | : | : | : | : | : |
Description
CW-type Zinc Finger
Coordinates
chr2:+:222782054..222806450
Molecular Weight (calculated)
174254.0 Da
IEP (calculated)
9.037
GRAVY (calculated)
-0.839
Length
1592 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGDDAELEEG EACACGDDTA FVDPDVALSY IDEKLQDILG HFQKDFEGGV SADNLGSKFG AYGSFLPTYQ RSPLPQTRSP PKAGNITSKS PFHQSNEDLS
0101: QKPPAVAVSS TPQSNGPVVP FSGDSIKKEI RPSTKSERGS VSHDSYGPSK CSDQNRLKVR IKVGSDNVLA RNNAAIYSGL GLDISSPSSN EDSPDGRGSL
0201: SPEVNNVPHE SPQTILQIMT CFSVPGGFLL SPLPANILQL TKKVVSSSKK WESNVDVENV QESYEGHVAK RVKSDGNKKR LIDAKNSKNK NDISAVMKKE
0301: IDMELVAGQK IVSEALKISL LSDPRAMDAK GENRLEEEPA ENNLVGIRDA RLKERCTKTD SMTVKVEPAK AEVMECLENS SFGSSEMDLS AVKGKSKPKT
0401: EKGEATLEDR NTTNDKDLIS DRKQKKKIKS GSKYNASNFE GSISNVINEG ASAVFHMGKI SGLEALPYDT NGENNSKSEV KKMQREQKAN VSTSSDFLEE
0501: EKHIHSSAAV KERSDMQSKP IHTGKKPKAK SHRDVRDNNF PEGSYGSKEQ DSLENKSAFG DPRPKEKPWK FDSEDSDAPG ISRKDSSYVK LDKHLATEEQ
0601: KMHILPPATA STANAAFIHA APVVIEEHWV CCDICQKWRL LPYEMNPSDL PKKWKCSMLQ WLPGMNRCEI SEEETTNALN ALYVPAPANG IPSVGLPHVA
0701: SSGLVTSSTP NMNGHIEQSR KRKNVLSDGN FVAEGSHQTQ GSGHPMSNQH APNKSKTHTD GIQYPIDRDS VSKSVDPTIK KQRSKSKHHS SYSDGVDLVE
0801: RPKKHSKVKS KRDLDRDEYK ASKKIRKEER HFDRDRNLGS GLASRDVPDE AKAFPVKSVT SKGSGERSDL SSSKQKNVSH HNHLENSKKA RQDYVGFPED
0901: ESKEYFHQSD VQRSDLSSKK RIVKKWEESQ YNPVAQVSKG AIKETYRDQN LKEAKLMSLN SEELFSMTSS KPPKAQHADQ VLFYDGGRTN SELVEDNTHF
1001: SGKTGLPEQE NSLSDKALDL GKPASDVAYI QTSAVTSSSS KASVSQKKKQ TTQAMKTSSI ESLSLSPQRN SNIDNVSASH SRVSGKDGSL NANSSTVPAM
1101: AKQLNTQVGV AVNDQWSSEP ILVGSSRRKS DRDNGQVQLT QGHASDGIHP ERGLNEDLQP ESGRKDSNIK NSHIPKSSNH LHSGEKNNYN TDGSPMQPGK
1201: HLVDPKTPVL DKGDSSMHEN KKSANSLQDR NGSTHCPPDG NPLLGLPSGK EKSYLKNNRQ DSQKPKPQIS PLKESKLDSH STPLKPNGSK LTPQSRQYNA
1301: ENGGRHGTAK QAIRSPADTF SPARKDNTST AYALKEARDL KHKANRLKEE GKELESTRLY FDSALKFLHV ASLLEPPSFD GLKQGDAAQS MYSDTAKLCN
1401: FVGHAYEKCK KMAAAALAYK CVEVAYLKAA YCKHPTASKD RQVLQAVVQT APGESPSSSA SDIDNLNNNG LSKGPSSKDA NSPQVVGNHL LLATRNQPHL
1501: MRLLAYTNDV NSAFEATRKS HMAIASASGN HENGVDGLSS VKTVLDFNFR SVNDLLSSMK LNIIQQCKSI GLSFELAGQL VQRVIIFLLF LR
0101: QKPPAVAVSS TPQSNGPVVP FSGDSIKKEI RPSTKSERGS VSHDSYGPSK CSDQNRLKVR IKVGSDNVLA RNNAAIYSGL GLDISSPSSN EDSPDGRGSL
0201: SPEVNNVPHE SPQTILQIMT CFSVPGGFLL SPLPANILQL TKKVVSSSKK WESNVDVENV QESYEGHVAK RVKSDGNKKR LIDAKNSKNK NDISAVMKKE
0301: IDMELVAGQK IVSEALKISL LSDPRAMDAK GENRLEEEPA ENNLVGIRDA RLKERCTKTD SMTVKVEPAK AEVMECLENS SFGSSEMDLS AVKGKSKPKT
0401: EKGEATLEDR NTTNDKDLIS DRKQKKKIKS GSKYNASNFE GSISNVINEG ASAVFHMGKI SGLEALPYDT NGENNSKSEV KKMQREQKAN VSTSSDFLEE
0501: EKHIHSSAAV KERSDMQSKP IHTGKKPKAK SHRDVRDNNF PEGSYGSKEQ DSLENKSAFG DPRPKEKPWK FDSEDSDAPG ISRKDSSYVK LDKHLATEEQ
0601: KMHILPPATA STANAAFIHA APVVIEEHWV CCDICQKWRL LPYEMNPSDL PKKWKCSMLQ WLPGMNRCEI SEEETTNALN ALYVPAPANG IPSVGLPHVA
0701: SSGLVTSSTP NMNGHIEQSR KRKNVLSDGN FVAEGSHQTQ GSGHPMSNQH APNKSKTHTD GIQYPIDRDS VSKSVDPTIK KQRSKSKHHS SYSDGVDLVE
0801: RPKKHSKVKS KRDLDRDEYK ASKKIRKEER HFDRDRNLGS GLASRDVPDE AKAFPVKSVT SKGSGERSDL SSSKQKNVSH HNHLENSKKA RQDYVGFPED
0901: ESKEYFHQSD VQRSDLSSKK RIVKKWEESQ YNPVAQVSKG AIKETYRDQN LKEAKLMSLN SEELFSMTSS KPPKAQHADQ VLFYDGGRTN SELVEDNTHF
1001: SGKTGLPEQE NSLSDKALDL GKPASDVAYI QTSAVTSSSS KASVSQKKKQ TTQAMKTSSI ESLSLSPQRN SNIDNVSASH SRVSGKDGSL NANSSTVPAM
1101: AKQLNTQVGV AVNDQWSSEP ILVGSSRRKS DRDNGQVQLT QGHASDGIHP ERGLNEDLQP ESGRKDSNIK NSHIPKSSNH LHSGEKNNYN TDGSPMQPGK
1201: HLVDPKTPVL DKGDSSMHEN KKSANSLQDR NGSTHCPPDG NPLLGLPSGK EKSYLKNNRQ DSQKPKPQIS PLKESKLDSH STPLKPNGSK LTPQSRQYNA
1301: ENGGRHGTAK QAIRSPADTF SPARKDNTST AYALKEARDL KHKANRLKEE GKELESTRLY FDSALKFLHV ASLLEPPSFD GLKQGDAAQS MYSDTAKLCN
1401: FVGHAYEKCK KMAAAALAYK CVEVAYLKAA YCKHPTASKD RQVLQAVVQT APGESPSSSA SDIDNLNNNG LSKGPSSKDA NSPQVVGNHL LLATRNQPHL
1501: MRLLAYTNDV NSAFEATRKS HMAIASASGN HENGVDGLSS VKTVLDFNFR SVNDLLSSMK LNIIQQCKSI GLSFELAGQL VQRVIIFLLF LR
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.