Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.81 | 49.38 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 2.74 | 47.87 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 39.84 | 46.29 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.37 | 42.39 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.46 | 42.11 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 40.02 | 41.51 |
| Os05t0371100-00 | Rice | cytosol | 3.1 | 34.93 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.51 | 33.86 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.57 | 33.64 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 18.86 | 33.44 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.39 | 33.12 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.39 | 32.71 |
| Zm00001d022481_P019 | Maize | nucleus | 30.9 | 31.89 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.2 | 31.48 |
| OQU90452 | Sorghum | nucleus | 30.47 | 31.35 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 30.11 | 31.31 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 30.05 | 31.27 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 30.05 | 31.25 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.14 | 31.17 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.84 | 31.07 |
| KXG39393 | Sorghum | mitochondrion | 24.88 | 30.55 |
| Zm00001d007121_P024 | Maize | nucleus | 29.2 | 30.15 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 29.5 | 29.94 |
| Zm00001d029134_P004 | Maize | mitochondrion | 24.57 | 29.6 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.74 | 29.43 |
| Os07t0669800-01 | Rice | nucleus | 18.49 | 29.01 |
| CDX76670 | Canola | nucleus | 22.14 | 28.33 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 25.0 | 28.15 |
| OQU77880 | Sorghum | nucleus | 24.33 | 28.07 |
| Zm00001d010490_P005 | Maize | nucleus | 24.27 | 28.06 |
| CDY11456 | Canola | nucleus | 22.02 | 27.91 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 25.0 | 27.86 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 24.88 | 27.82 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 24.82 | 27.77 |
| Bra007709.1-P | Field mustard | nucleus | 21.9 | 27.76 |
| CDX67908 | Canola | nucleus | 22.02 | 27.65 |
| Bra003514.1-P | Field mustard | nucleus | 21.96 | 27.33 |
| AT3G62900.2 | Thale cress | nucleus | 23.24 | 27.23 |
| CDY25123 | Canola | nucleus | 21.65 | 26.95 |
| CDY18138 | Canola | nucleus | 15.51 | 26.79 |
| Solyc09g074670.2.1 | Tomato | nucleus | 27.01 | 26.78 |
| CDX89924 | Canola | nucleus | 15.45 | 26.51 |
| KRH68140 | Soybean | nucleus | 26.95 | 26.51 |
| KRG96403 | Soybean | nucleus | 27.07 | 26.47 |
| CDY54298 | Canola | nucleus | 14.9 | 26.06 |
| Bra033505.1-P | Field mustard | nucleus | 14.78 | 25.96 |
| CDY66331 | Canola | nucleus | 14.78 | 25.96 |
| PGSC0003DMT400065641 | Potato | nucleus | 2.92 | 25.81 |
| CDY37451 | Canola | nucleus | 16.0 | 25.36 |
| AT4G15730.1 | Thale cress | nucleus | 15.94 | 24.74 |
| CDY32489 | Canola | nucleus | 16.06 | 24.56 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 19.53 | 24.5 |
| KRH50884 | Soybean | nucleus | 23.97 | 24.5 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.83 | 24.42 |
| Solyc01g067600.2.1 | Tomato | nucleus | 24.45 | 24.36 |
| Solyc06g008720.2.1 | Tomato | nucleus | 18.8 | 24.29 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 23.84 | 24.08 |
| KRH12132 | Soybean | nucleus | 24.64 | 23.95 |
| Bra032575.1-P | Field mustard | nucleus | 10.16 | 23.82 |
| KRH02231 | Soybean | nucleus | 23.48 | 23.75 |
| KRH37127 | Soybean | nucleus | 24.09 | 23.66 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.7 | 23.33 |
| AT1G02990.4 | Thale cress | nucleus | 17.21 | 22.14 |
| Bra033364.1-P | Field mustard | nucleus | 14.23 | 15.21 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P08980_001 | EnsemblPlants:GSMUA_Achr3T08980_001 | EnsemblPlantsGene:GSMUA_Achr3G08980_001 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 |
| PFAM:PF07496 | PFscan:PS51050 | SEG:seg | UniParc:UPI000296226B | UniProt:M0SD15 | MapMan:35.2 |
Description
CW-type Zinc Finger, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G08980_001]
Coordinates
chr3:+:6475388..6491730
Molecular Weight (calculated)
181208.0 Da
IEP (calculated)
8.881
GRAVY (calculated)
-0.773
Length
1644 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEGENELEEG EAYSGQEDDS CIDPDALSYI DEKIQNVLGH FQKDFEAGVS AENLGAKFGG YGSFLPAYQR SPSILCQTKS PQKVPNQNVT KSPYNPSVEV
0101: TYQNPSVMMS SSFPKNNTVA VPPSDESCKR DMSINKPNIQ EPTSQHGFKK TVSGTDHKTL KVRIKVGPDN DLARIYSGLG LDISPSSSSE DSPSRSGGIS
0201: PEFQVMPDES PKTIIQVMTC LMVPGGFLLS PLQDSLFQLT EEDSSFIKQC QGGKSYHELP QTSTGSADFT LHLAEVKCQM ENHSKSTKQK AKPREIKSSE
0301: GKADLTTSWE IDTETQVRQE LASNSLNMSS SSFSKNAGKK REKQIVGSLT KNDTNMSDHS RETKKASLKD GSTFPGLMND KHFELFESTT NNAAGNSGNE
0401: VMLSNEQHNS KASMLQKAFE EQSTNNHKDE KSNLQSEGRS KKTLQRKDQI SDGKKKVKLS QANSESFGNY LKDSISGNSS AMPKEKKKTS HAKVGHADKK
0501: SKVLNSRTDS SGAGIRESSG YVNWDAKTEL LENGVGSLDF RSKGKQKAIK AKHEKEPIIG QILAPSSTYN APAMGATVAP QPPVFINEHW VCCDICQKWR
0601: LLPYGTDPDH LPKKWQCSLL NWLPRMNSCD ISEEETTNAL RALYLVPAPE NSASLNVHHD VVSTNVSWAS GVHLGQNLEP GFPNVPTVAK KKSGLKCDLD
0701: LPHSTSSQFS NSVKKDQHTS VKFRSSNDAN QYPPFELNSS NKGVPGDASR SSDFNAEKQK PKQKDKHKKR GSYSDGGDHS GKIEKHSKSK SKREVDQDDL
0801: RAPKKPKKES LQYPSKDCSE HDPRWNSFPL SKGSKCDLNG NYSSSKKLGD EVQSITNGES KQHFVASDVD KLSIMDISTK KKKGKERQGS QHGEEVHVTT
0901: KHVLENEGSK TTKLNDRMDT KGNMTKMILP ASGEHLTSGM DNEVPYVVEK KHRSSQSEGN IASQRALDFD SSKRDVMFTQ PPVAEAANSS SSKVSGSRKS
1001: RSNLQETKGS PVESVSSSPL RIPSFEKLSH KSILEQRNGA TNSAANSGIL DSLEGTSDYL RKERNKSSDG KSEERLHVKL SAQNDSSPAE LGKHSYRDDI
1101: QDMGKVNGHQ LVNDSSQRKS GKNSSGFKEK HRGRRGNSST SAVQEDMDGV PSSFSNPQRD LDSKIPVGTR CVKPDFQVGP SFHNEKALNH PYLDRINCPE
1201: PPSGLGKSQL KLSCDKLDTQ PRGRHMVTSP LKASRSDDVA DAVNSDTSKV VKQHRLQDCH NGLHNNNLRH ATPFVSDSSS PLRKENCAAV LKEARDLKHS
1301: ANRLKSEGLE LESTGLYFEA ALKFLHVAAL MEPVNFDSAK QAEAAQMYFE TAKLCEFVAH EYEKVKIMAA VSLAYKCVEV AYLKTTYCKS PNATKDRHEL
1401: QSAFQILPPG ESPSSSSSDV DNLNNQAILG KNASAKGVSS PQVAGNHVIA ARHHHQVVRL LHYTNYLNCA FEATRKSEAA FAAASVSPRK DRTGCLSSVR
1501: KVLDFNFHNV EELLRFVRLS LECIGPIVSW LNKLTCYGFT LSSRPSLQPL QSIWKFGTGT YMKCFMLRQF GTKCQISPFL ILQGRAQLTT YSGDICNIVV
1601: YTNIAGGKEY YSLVDVAIRL QAKSSEGWTW LYDLATARQL YYYS
0101: TYQNPSVMMS SSFPKNNTVA VPPSDESCKR DMSINKPNIQ EPTSQHGFKK TVSGTDHKTL KVRIKVGPDN DLARIYSGLG LDISPSSSSE DSPSRSGGIS
0201: PEFQVMPDES PKTIIQVMTC LMVPGGFLLS PLQDSLFQLT EEDSSFIKQC QGGKSYHELP QTSTGSADFT LHLAEVKCQM ENHSKSTKQK AKPREIKSSE
0301: GKADLTTSWE IDTETQVRQE LASNSLNMSS SSFSKNAGKK REKQIVGSLT KNDTNMSDHS RETKKASLKD GSTFPGLMND KHFELFESTT NNAAGNSGNE
0401: VMLSNEQHNS KASMLQKAFE EQSTNNHKDE KSNLQSEGRS KKTLQRKDQI SDGKKKVKLS QANSESFGNY LKDSISGNSS AMPKEKKKTS HAKVGHADKK
0501: SKVLNSRTDS SGAGIRESSG YVNWDAKTEL LENGVGSLDF RSKGKQKAIK AKHEKEPIIG QILAPSSTYN APAMGATVAP QPPVFINEHW VCCDICQKWR
0601: LLPYGTDPDH LPKKWQCSLL NWLPRMNSCD ISEEETTNAL RALYLVPAPE NSASLNVHHD VVSTNVSWAS GVHLGQNLEP GFPNVPTVAK KKSGLKCDLD
0701: LPHSTSSQFS NSVKKDQHTS VKFRSSNDAN QYPPFELNSS NKGVPGDASR SSDFNAEKQK PKQKDKHKKR GSYSDGGDHS GKIEKHSKSK SKREVDQDDL
0801: RAPKKPKKES LQYPSKDCSE HDPRWNSFPL SKGSKCDLNG NYSSSKKLGD EVQSITNGES KQHFVASDVD KLSIMDISTK KKKGKERQGS QHGEEVHVTT
0901: KHVLENEGSK TTKLNDRMDT KGNMTKMILP ASGEHLTSGM DNEVPYVVEK KHRSSQSEGN IASQRALDFD SSKRDVMFTQ PPVAEAANSS SSKVSGSRKS
1001: RSNLQETKGS PVESVSSSPL RIPSFEKLSH KSILEQRNGA TNSAANSGIL DSLEGTSDYL RKERNKSSDG KSEERLHVKL SAQNDSSPAE LGKHSYRDDI
1101: QDMGKVNGHQ LVNDSSQRKS GKNSSGFKEK HRGRRGNSST SAVQEDMDGV PSSFSNPQRD LDSKIPVGTR CVKPDFQVGP SFHNEKALNH PYLDRINCPE
1201: PPSGLGKSQL KLSCDKLDTQ PRGRHMVTSP LKASRSDDVA DAVNSDTSKV VKQHRLQDCH NGLHNNNLRH ATPFVSDSSS PLRKENCAAV LKEARDLKHS
1301: ANRLKSEGLE LESTGLYFEA ALKFLHVAAL MEPVNFDSAK QAEAAQMYFE TAKLCEFVAH EYEKVKIMAA VSLAYKCVEV AYLKTTYCKS PNATKDRHEL
1401: QSAFQILPPG ESPSSSSSDV DNLNNQAILG KNASAKGVSS PQVAGNHVIA ARHHHQVVRL LHYTNYLNCA FEATRKSEAA FAAASVSPRK DRTGCLSSVR
1501: KVLDFNFHNV EELLRFVRLS LECIGPIVSW LNKLTCYGFT LSSRPSLQPL QSIWKFGTGT YMKCFMLRQF GTKCQISPFL ILQGRAQLTT YSGDICNIVV
1601: YTNIAGGKEY YSLVDVAIRL QAKSSEGWTW LYDLATARQL YYYS
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.