Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G246700.4 | Wheat | nucleus | 95.05 | 96.03 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 95.25 | 95.58 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 91.66 | 92.04 |
| OQU77880 | Sorghum | nucleus | 49.42 | 51.16 |
| Os05t0371100-00 | Rice | cytosol | 5.02 | 50.68 |
| Zm00001d010490_P005 | Maize | nucleus | 48.47 | 50.28 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 2.98 | 46.81 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.2 | 38.75 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.29 | 33.33 |
| PGSC0003DMT400005774 | Potato | cytosol | 1.97 | 31.52 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.31 | 29.43 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.37 | 29.28 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.1 | 28.39 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 26.92 | 28.06 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.03 | 27.47 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.03 | 27.47 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 29.42 | 27.45 |
| PGSC0003DMT400031270 | Potato | nucleus | 5.83 | 26.79 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 27.19 | 25.3 |
| CDX76670 | Canola | nucleus | 21.97 | 25.21 |
| AT3G62900.2 | Thale cress | nucleus | 23.86 | 25.09 |
| Bra007709.1-P | Field mustard | nucleus | 22.03 | 25.06 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 27.86 | 25.0 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.22 | 24.92 |
| CDY11456 | Canola | nucleus | 21.9 | 24.9 |
| CDX67908 | Canola | nucleus | 21.83 | 24.6 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 26.85 | 24.44 |
| Bra003514.1-P | Field mustard | nucleus | 21.76 | 24.3 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.97 | 24.17 |
| CDY25123 | Canola | nucleus | 21.63 | 24.15 |
| CDY54298 | Canola | nucleus | 14.85 | 23.3 |
| CDY66331 | Canola | nucleus | 14.78 | 23.29 |
| Bra033505.1-P | Field mustard | nucleus | 14.71 | 23.18 |
| KRG96403 | Soybean | nucleus | 26.24 | 23.02 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.14 | 23.02 |
| KRH68140 | Soybean | nucleus | 25.49 | 22.5 |
| AT4G15730.1 | Thale cress | nucleus | 16.0 | 22.29 |
| CDY18138 | Canola | nucleus | 13.97 | 21.64 |
| PGSC0003DMT400065641 | Potato | nucleus | 2.71 | 21.51 |
| CDX89924 | Canola | nucleus | 13.9 | 21.4 |
| Bra032575.1-P | Field mustard | nucleus | 10.1 | 21.26 |
| Solyc09g074670.2.1 | Tomato | nucleus | 23.66 | 21.05 |
| Solyc06g008720.2.1 | Tomato | nucleus | 17.97 | 20.83 |
| CDY37451 | Canola | nucleus | 14.37 | 20.44 |
| CDY32489 | Canola | nucleus | 14.71 | 20.19 |
| Solyc01g067600.2.1 | Tomato | nucleus | 22.51 | 20.12 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 22.17 | 20.09 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 17.49 | 19.69 |
| KRH12132 | Soybean | nucleus | 22.44 | 19.57 |
| KRH37127 | Soybean | nucleus | 22.17 | 19.53 |
| KRH50884 | Soybean | nucleus | 20.88 | 19.15 |
| KRH02231 | Soybean | nucleus | 21.08 | 19.14 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.25 | 18.6 |
| AT1G02990.4 | Thale cress | nucleus | 15.93 | 18.39 |
| Bra033364.1-P | Field mustard | nucleus | 15.53 | 14.89 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G237200.3 | EnsemblPlantsGene:TraesCS1A01G237200 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 |
| PFscan:PS51050 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:420510121..420519040
Molecular Weight (calculated)
159860.0 Da
IEP (calculated)
8.391
GRAVY (calculated)
-0.780
Length
1475 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLGGGARRGA GHEEGELELE DSQALGGDGG SPDAGGHELL DPDSLTYIDE RLQNVLGHFQ KDFEGGVLAE NSGSLYGGYG SFLPPNQHSP SVATQSRSPA
0101: VPPNRGSASR SPYVPVESAQ KSHFVKNGLD SRGKDDYCQR TSNGTNGNPQ QRMLNRAVNG PEQKAPKIHI KVNNNRHLAR NTAAIYSGLG LDISPSSSMD
0201: DSLDGCAGAP EPKNLPDESP HTILQIMTCH PIPGGLLLSP LTENILALRK KSASARKKHE APAFDDDKTE LNRDWCHTTS AAQGDQGQMV HKYNYDEKKD
0301: HLLNIKSSKS KRDNSTIMNN GTMPDLLDIS DDQDSIVPGS IQTEQHSLEA SAKLVPDVSN HLNLKETKNV PLKGRIRDKI PLRDIESVHV KAVNLANDGN
0401: HPKGKANSEA CTARNSFDNL SKDSKTEPTL GQGLVDKVKY DSDGYDHRLS ATSSQPNNLP PSGTATSADR DKRKVVHVKD EPSQCKREES GSLVNADSMD
0501: IITENVGGNP SGMPKRKMKI SSLQTAPSGK KLKVKAHKQL SNGITRKSHG EDKSVKPEKE TVSSGETDNG RSDGVNDGDH KISHLNFDRS APVPSACMTG
0601: AMESSVAVPV EPVLINEQWV CCDKCEKWRL LPYWMNPDIL PKKWRCNMQS WLHGMNNCKI SEDETTKALR AMPPAPENNI SVDVCHDIAT SGVCAATIPP
0701: TIQGDIKSIA TSGTLKVDSS ANTSNNLKMG EMSKSSKKLE APTSRNPDDV DCFPKQKGKR KHIGSSDDGE TVAVDRLHPE SKSSRVGFDH DSLRASKKMN
0801: KEPNEPAKHH PSEFEISKSS PSVKGTPKSL HRYSGVSPST GKYGSSSLVK CNDDKIISNG GIRTSDVGRS DVPELSIKNR KSKQRQLSKR GPDPIVSNAL
0901: PKHTVEEALS ESNHAKENPM PELNFLKAAD RKVAHARGPI AGTDSDKECL SEQHQENTHL QQHSLLSQNS MKKNMCYAQA SAAATSSSSK VSSSHKSKVD
1001: FQETRASPVE SVSSSPLRTT DKNLVDQHKR YPSAVAEKVL SQESGKSCLS FSKEKNDFGS GSDHAKAHGS GCLSGDMHHH VLKDGELQKD KQDNECSKND
1101: DSELGTRNGL LNPVKVQKVN SHVLSIRGNG DDKLPPSLQN GKTSPHLNSN QCDHAKLTSG KHPVQVKPDK GDAEQKDMKT NPSTVKGSKQ HPALNDSSNG
1201: DLSYKAKQLK KAVLENTKQA TLSRDALNPV NTSVLLKEAR DLKHLSKRLK EKGDDLESAN MCFEAGLKFL HVASLLEAPS IDSSKQGDSI QAIRLYSETG
1301: NLCGFCAREF ERLKKMASAA LAYKCVEVAY MKAAFYKHPG AIKDKHALQA TSLMVPPAES PSSSASDVDN LNNQSTAAKA ISRALYSPKI GGNSIPRNNH
1401: HLMGLLAYAD DINYAFDGTR KSQSSLAAYV TDMGNGQAEG IALVREVLEF SFHNVKGLLQ LIRHSLESIN HESVK
0101: VPPNRGSASR SPYVPVESAQ KSHFVKNGLD SRGKDDYCQR TSNGTNGNPQ QRMLNRAVNG PEQKAPKIHI KVNNNRHLAR NTAAIYSGLG LDISPSSSMD
0201: DSLDGCAGAP EPKNLPDESP HTILQIMTCH PIPGGLLLSP LTENILALRK KSASARKKHE APAFDDDKTE LNRDWCHTTS AAQGDQGQMV HKYNYDEKKD
0301: HLLNIKSSKS KRDNSTIMNN GTMPDLLDIS DDQDSIVPGS IQTEQHSLEA SAKLVPDVSN HLNLKETKNV PLKGRIRDKI PLRDIESVHV KAVNLANDGN
0401: HPKGKANSEA CTARNSFDNL SKDSKTEPTL GQGLVDKVKY DSDGYDHRLS ATSSQPNNLP PSGTATSADR DKRKVVHVKD EPSQCKREES GSLVNADSMD
0501: IITENVGGNP SGMPKRKMKI SSLQTAPSGK KLKVKAHKQL SNGITRKSHG EDKSVKPEKE TVSSGETDNG RSDGVNDGDH KISHLNFDRS APVPSACMTG
0601: AMESSVAVPV EPVLINEQWV CCDKCEKWRL LPYWMNPDIL PKKWRCNMQS WLHGMNNCKI SEDETTKALR AMPPAPENNI SVDVCHDIAT SGVCAATIPP
0701: TIQGDIKSIA TSGTLKVDSS ANTSNNLKMG EMSKSSKKLE APTSRNPDDV DCFPKQKGKR KHIGSSDDGE TVAVDRLHPE SKSSRVGFDH DSLRASKKMN
0801: KEPNEPAKHH PSEFEISKSS PSVKGTPKSL HRYSGVSPST GKYGSSSLVK CNDDKIISNG GIRTSDVGRS DVPELSIKNR KSKQRQLSKR GPDPIVSNAL
0901: PKHTVEEALS ESNHAKENPM PELNFLKAAD RKVAHARGPI AGTDSDKECL SEQHQENTHL QQHSLLSQNS MKKNMCYAQA SAAATSSSSK VSSSHKSKVD
1001: FQETRASPVE SVSSSPLRTT DKNLVDQHKR YPSAVAEKVL SQESGKSCLS FSKEKNDFGS GSDHAKAHGS GCLSGDMHHH VLKDGELQKD KQDNECSKND
1101: DSELGTRNGL LNPVKVQKVN SHVLSIRGNG DDKLPPSLQN GKTSPHLNSN QCDHAKLTSG KHPVQVKPDK GDAEQKDMKT NPSTVKGSKQ HPALNDSSNG
1201: DLSYKAKQLK KAVLENTKQA TLSRDALNPV NTSVLLKEAR DLKHLSKRLK EKGDDLESAN MCFEAGLKFL HVASLLEAPS IDSSKQGDSI QAIRLYSETG
1301: NLCGFCAREF ERLKKMASAA LAYKCVEVAY MKAAFYKHPG AIKDKHALQA TSLMVPPAES PSSSASDVDN LNNQSTAAKA ISRALYSPKI GGNSIPRNNH
1401: HLMGLLAYAD DINYAFDGTR KSQSSLAAYV TDMGNGQAEG IALVREVLEF SFHNVKGLLQ LIRHSLESIN HESVK
0001: MILVSSSDAR SELGLGFGGL GEEIMQDCDF EEESTHSYVS CVDPDVALSY IDEKLENVLG HFQKDFEGGV SAENLGAKFG GYGSFLSMYQ RSPVCSRPKT
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.