Factsheet for PGSC0003DMT400039034

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018802
PGSC0003DMT400076768

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15730.1	PGSC0003DMT400018802	AT4G02150.1	21798944
AT4G15730.1	PGSC0003DMT400076768	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005780	Potato	nucleus	94.32	94.62
PGSC0003DMT400039039	Potato	nucleus	94.32	93.15
Solyc12g017610.1.1	Tomato	nucleus	89.59	87.65
Solyc08g067570.1.1	Tomato	nucleus	87.7	85.8
PGSC0003DMT400031270	Potato	nucleus	79.18	78.19
PGSC0003DMT400005776	Potato	nucleus	55.84	68.6
PGSC0003DMT400005774	Potato	cytosol	17.35	59.78
PGSC0003DMT400065641	Potato	nucleus	28.08	47.85
Os05t0371100-00	Rice	cytosol	11.04	23.97
Os07t0669800-01	Rice	nucleus	32.81	9.92
Bra033505.1-P	Field mustard	nucleus	26.81	9.08
CDY66331	Canola	nucleus	26.81	9.08
CDY54298	Canola	nucleus	26.18	8.83
AT4G15730.1	Thale cress	nucleus	25.87	7.74
GSMUA_Achr5P08000_001	Banana	nucleus	34.07	7.63
KXG39393	Sorghum	mitochondrion	31.23	7.39
GSMUA_Achr8P21920_001	Banana	nucleus	35.96	7.19
Zm00001d029134_P004	Maize	mitochondrion	30.28	7.03
Os03t0347300-01	Rice	cytosol, nucleus	19.87	6.8
TraesCS2D01G118500.1	Wheat	nucleus	32.81	6.58
TraesCS2B01G135800.1	Wheat	nucleus	32.81	6.58
TraesCS2A01G116600.1	Wheat	nucleus	32.81	6.58
KRH37127	Soybean	nucleus	33.75	6.39
GSMUA_Achr3P08980_001	Banana	nucleus	33.12	6.39
OQU90452	Sorghum	nucleus	31.86	6.32
TraesCS1B01G246700.4	Wheat	nucleus	29.02	6.3
TraesCS1D01G235200.1	Wheat	nucleus	29.02	6.26
Zm00001d022481_P019	Maize	nucleus	31.23	6.21
HORVU1Hr1G058250.1	Barley	nucleus	28.71	6.19
Zm00001d007121_P024	Maize	nucleus	30.91	6.16
TraesCS1A01G237200.3	Wheat	nucleus	28.39	6.1
KRH12132	Soybean	nucleus	32.49	6.09
KRH02231	Soybean	nucleus	30.91	6.03
OQU77880	Sorghum	nucleus	26.81	5.96
KRH50884	Soybean	nucleus	29.97	5.91
Zm00001d010490_P005	Maize	nucleus	26.18	5.84
PGSC0003DMT400029536	Potato	nucleus	9.46	4.92
VIT_05s0020g01570.t01	Wine grape	cytosol, mitochondrion, plastid	24.29	4.73
PGSC0003DMT400029537	Potato	mitochondrion	0.63	3.51
PGSC0003DMT400013673	Potato	cytosol, plastid, vacuole	1.58	3.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400039034	EnsemblPlantsGene:PGSC0003DMG400015089	Gene3D:3.30.40.100	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR011124	InterPro:Znf_CW	PANTHER:PTHR23336	PANTHER:PTHR23336:SF14	PFAM:PF07496	PFscan:PS51050
PGSC:PGSC0003DMG400015089	SEG:seg	UniParc:UPI00029513D8	UniProt:M1B7P2	MapMan:35.2	:

Description

Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015089]

Coordinates

chr8:-:41317038..41318195

Molecular Weight (calculated)

35571.1 Da

IEP (calculated)

8.449

GRAVY (calculated)

-0.756

Length

317 amino acids

Sequence
(BLAST)

001: MAEEHEIEEG EIYDDSHIDI DAKIQSILGD YMKDFEGAVS AENLGPKFGV YGSFLPIDQL VIQPHISQKL PSSSHKPIRI RIKLRSGNTA APKSSDLHTA
101: SHCPELTTSG DESPLAPFII QEDWIQCSTC RKRRLLPYGT KPDQLFQSWV CTMLDWLPGM NCCDISEDDT TSALHALYQS LIQSNFQNRG AKGTSIDVKA
201: HNGREVSVKK RKSREQDYLG NELGESDANA FEGKFRKQKK SKVIQTEKKK SSRSKGEGKS TRKDTGIKDS APIEREEQAN KYGVKQQSEA ECGMMRKPVY
301: KKAIGYGKVA RAYIAYW

Best Arabidopsis Sequence Match ( AT3G62900.2 )
(BLAST)

0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR

Arabidopsis Description

CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.