Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029537 | Potato | mitochondrion | 0.98 | 10.53 |
| PGSC0003DMT400039034 | Potato | nucleus | 4.92 | 9.46 |
| PGSC0003DMT400039039 | Potato | nucleus | 4.75 | 9.03 |
| PGSC0003DMT400005780 | Potato | nucleus | 4.59 | 8.86 |
| PGSC0003DMT400005774 | Potato | cytosol | 1.31 | 8.7 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 2.13 | 8.12 |
| PGSC0003DMT400031270 | Potato | nucleus | 4.1 | 7.79 |
| PGSC0003DMT400005776 | Potato | nucleus | 3.28 | 7.75 |
| PGSC0003DMT400065641 | Potato | nucleus | 1.97 | 6.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400029536 | EnsemblPlantsGene:PGSC0003DMG402011362 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PGSC:PGSC0003DMG402011362 | SEG:seg |
| UniParc:UPI0002954E8A | UniProt:M1ASZ3 | MapMan:35.2 | : | : | : |
Description
ZYRO0G14608p [Source:PGSC_GENE;Acc:PGSC0003DMG402011362]
Coordinates
chr9:+:52193244..52195469
Molecular Weight (calculated)
67035.3 Da
IEP (calculated)
9.962
GRAVY (calculated)
-1.180
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNTSETDLD GSTAKKFRRD DVHNDYDPIE AKPGQSSSTG LSGSEKVRDK YKYKEPKVDS LKNLAVAKNP ESHSLDGSIQ KCDSKDSLKR KWSECQNPET
101: LPPPDIIEET CDNGRKKEKK AKVSKSVGKD SSRSGASGET DVKGRGKKGE RVGQDLYSTV SQRSADAEDS PKRDLSALLP SVAATSSSSK VSGSHKNRTS
201: LQEPKSSPVE SVSSSPLRIS KKDLCSATKR NPKRKDEHKN ANSIPNSTPR WSSYGENDRC SNRSGIKKEE SSNGKHHGME SAELDYQDKD VHDVSGGTIK
301: EKMKGSDFAT HRLTDVIADP LGQANQYAFR TENSDQSLNN ERRNNSQFHN NGSISKDEKG LFSQHNEKNR TIRSDSGKCK TKDRDISNES SDQRIDEGKL
401: TSGRNKVEDK SGASSDRLQQ GSKKDSFGEL LNENVKGVIQ SKFVDGAEVK LDVISGLDKR QAALTDRDDG RSSRKLASEK TQQIEVLEKG KSHLTSPSIR
501: GQNETVQSSQ PVPAFKREGE ANLLAVDAFE GEMLNASRQG KKSESHPGNK PNSLRQSTPP ANKARAPDSR SPIRKDSASQ AAANAIKEAT NLKHLADRHK
601: VYIIFLLIQR
101: LPPPDIIEET CDNGRKKEKK AKVSKSVGKD SSRSGASGET DVKGRGKKGE RVGQDLYSTV SQRSADAEDS PKRDLSALLP SVAATSSSSK VSGSHKNRTS
201: LQEPKSSPVE SVSSSPLRIS KKDLCSATKR NPKRKDEHKN ANSIPNSTPR WSSYGENDRC SNRSGIKKEE SSNGKHHGME SAELDYQDKD VHDVSGGTIK
301: EKMKGSDFAT HRLTDVIADP LGQANQYAFR TENSDQSLNN ERRNNSQFHN NGSISKDEKG LFSQHNEKNR TIRSDSGKCK TKDRDISNES SDQRIDEGKL
401: TSGRNKVEDK SGASSDRLQQ GSKKDSFGEL LNENVKGVIQ SKFVDGAEVK LDVISGLDKR QAALTDRDDG RSSRKLASEK TQQIEVLEKG KSHLTSPSIR
501: GQNETVQSSQ PVPAFKREGE ANLLAVDAFE GEMLNASRQG KKSESHPGNK PNSLRQSTPP ANKARAPDSR SPIRKDSASQ AAANAIKEAT NLKHLADRHK
601: VYIIFLLIQR
0001: MFLALTQMLL SLTLMRNSKT SWDIFRKILK VEFLLKIWFG GYGSFLSMYQ RSPVCSRPKT SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCDQRN
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCDQRN
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.