Factsheet for PGSC0003DMT400005774

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018802
PGSC0003DMT400076768

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15730.1	PGSC0003DMT400018802	AT4G02150.1	21798944
AT4G15730.1	PGSC0003DMT400076768	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065641	Potato	nucleus	46.74	23.12
PGSC0003DMT400005776	Potato	nucleus	53.26	18.99
Os05t0371100-00	Rice	cytosol	29.35	18.49
PGSC0003DMT400039034	Potato	nucleus	59.78	17.35
PGSC0003DMT400005780	Potato	nucleus	58.7	17.09
PGSC0003DMT400039039	Potato	nucleus	58.7	16.82
PGSC0003DMT400031270	Potato	nucleus	58.7	16.82
Os07t0669800-01	Rice	nucleus	39.13	3.44
GSMUA_Achr5P08000_001	Banana	nucleus	42.39	2.76
Bra033505.1-P	Field mustard	nucleus	27.17	2.67
CDY66331	Canola	nucleus	27.17	2.67
CDY54298	Canola	nucleus	27.17	2.66
GSMUA_Achr8P21920_001	Banana	nucleus	43.48	2.52
GSMUA_Achr3P08980_001	Banana	nucleus	42.39	2.37
KXG39393	Sorghum	mitochondrion	33.7	2.32
TraesCS2A01G116600.1	Wheat	nucleus	39.13	2.28
Zm00001d029134_P004	Maize	mitochondrion	33.7	2.27
TraesCS2D01G118500.1	Wheat	nucleus	38.04	2.22
TraesCS2B01G135800.1	Wheat	nucleus	38.04	2.21
Zm00001d022481_P019	Maize	nucleus	36.96	2.13
OQU90452	Sorghum	nucleus	36.96	2.13
KRH37127	Soybean	nucleus	38.04	2.09
AT4G15730.1	Thale cress	nucleus	23.91	2.08
KRH12132	Soybean	nucleus	38.04	2.07
TraesCS1B01G246700.4	Wheat	nucleus	32.61	2.05
TraesCS1D01G235200.1	Wheat	nucleus	32.61	2.04
Zm00001d007121_P024	Maize	nucleus	34.78	2.01
HORVU1Hr1G058250.1	Barley	nucleus	31.52	1.97
TraesCS1A01G237200.3	Wheat	nucleus	31.52	1.97
KRH02231	Soybean	nucleus	32.61	1.85
KRH50884	Soybean	nucleus	31.52	1.8
Zm00001d010490_P005	Maize	nucleus	26.09	1.69
OQU77880	Sorghum	nucleus	26.09	1.68
PGSC0003DMT400029536	Potato	nucleus	8.7	1.31
Os03t0347300-01	Rice	cytosol, nucleus	7.61	0.76
VIT_05s0020g01570.t01	Wine grape	cytosol, mitochondrion, plastid	13.04	0.74
PGSC0003DMT400029537	Potato	mitochondrion	0.0	0.0
PGSC0003DMT400013673	Potato	cytosol, plastid, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400005774	EnsemblPlantsGene:PGSC0003DMG400002258	PANTHER:PTHR23336	PANTHER:PTHR23336:SF14	PGSC:PGSC0003DMG400002258	UniParc:UPI0002958910
UniProt:M0ZQE9	MapMan:35.2	:	:	:	:

Description

Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002258]

Coordinates

chr8:-:41434199..41435070

Molecular Weight (calculated)

10089.0 Da

IEP (calculated)

4.582

GRAVY (calculated)

-0.295

Length

92 amino acids

Sequence
(BLAST)

1: MAEEHEIEGE IYDDSHIDID AKIQGVLGDY MKDFEGAVSA ENLGPKFGVN GSFLPIDQLV IQPQISQKLP SPTPISSHKP IRIRTKVCSS LP

Best Arabidopsis Sequence Match ( AT1G02990.3 )
(BLAST)

0001: MILVSSSDAR SELGLGFGGL GEEIMQDCDF EEESTHSYVS CVDPDVALSY IDEKLENVLG HFQKDFEGGV SAENLGAKFG GYGSFLSMYQ RSPVCSRPKT
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR

Arabidopsis Description

BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.