Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000810.1-P | |
| Bra000891.1-P | |
| Bra008559.1-P | |
| Bra029532.1-P | |
| Bra032645.1-P | |
| Bra033247.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66331 | Canola | nucleus | 99.47 | 99.47 |
| AT4G15730.1 | Thale cress | nucleus | 53.31 | 47.12 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.67 | 27.17 |
| PGSC0003DMT400005780 | Potato | nucleus | 9.08 | 26.9 |
| PGSC0003DMT400039034 | Potato | nucleus | 9.08 | 26.81 |
| PGSC0003DMT400039039 | Potato | nucleus | 8.97 | 26.17 |
| Solyc08g067570.1.1 | Tomato | nucleus | 8.76 | 25.31 |
| PGSC0003DMT400031270 | Potato | nucleus | 8.65 | 25.23 |
| Os05t0371100-00 | Rice | cytosol | 3.85 | 24.66 |
| Solyc12g017610.1.1 | Tomato | nucleus | 8.44 | 24.38 |
| Solyc08g067490.1.1 | Tomato | nucleus | 7.91 | 23.95 |
| PGSC0003DMT400065641 | Potato | nucleus | 4.49 | 22.58 |
| Solyc08g067140.1.1 | Tomato | nucleus | 6.3 | 22.26 |
| Solyc08g067590.1.1 | Tomato | nucleus | 2.46 | 19.17 |
| Bra007709.1-P | Field mustard | nucleus | 25.64 | 18.5 |
| Bra003514.1-P | Field mustard | nucleus | 24.89 | 17.64 |
| KRH50884 | Soybean | nucleus | 29.06 | 16.92 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 24.89 | 16.47 |
| PGSC0003DMT400005776 | Potato | nucleus | 4.49 | 16.28 |
| KRH02231 | Soybean | nucleus | 28.21 | 16.25 |
| Os07t0669800-01 | Rice | nucleus | 18.06 | 16.13 |
| KXG39393 | Sorghum | mitochondrion | 22.86 | 15.98 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 26.92 | 15.94 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 26.92 | 15.94 |
| KRH12132 | Soybean | nucleus | 28.74 | 15.91 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 26.82 | 15.89 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 15.71 | 15.86 |
| Zm00001d007121_P024 | Maize | nucleus | 26.92 | 15.83 |
| Solyc01g067600.2.1 | Tomato | nucleus | 27.56 | 15.64 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 26.28 | 15.52 |
| Zm00001d029134_P004 | Maize | mitochondrion | 22.54 | 15.46 |
| OQU90452 | Sorghum | nucleus | 26.39 | 15.46 |
| KRH37127 | Soybean | nucleus | 27.46 | 15.35 |
| Bra032575.1-P | Field mustard | nucleus | 11.43 | 15.26 |
| Zm00001d022481_P019 | Maize | nucleus | 25.96 | 15.25 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 23.4 | 15.0 |
| OQU77880 | Sorghum | nucleus | 22.65 | 14.88 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 25.96 | 14.78 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 23.18 | 14.77 |
| Zm00001d010490_P005 | Maize | nucleus | 22.44 | 14.77 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 23.18 | 14.76 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 25.64 | 14.74 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 23.18 | 14.71 |
| Bra033364.1-P | Field mustard | nucleus | 16.24 | 9.88 |
Protein Annotations
| EnsemblPlants:Bra033505.1 | EnsemblPlants:Bra033505.1-P | EnsemblPlantsGene:Bra033505 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008270 | GO:GO:0009506 | InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 |
| PANTHER:PTHR23336:SF47 | PFAM:PF07496 | PFscan:PS51050 | SEG:seg | UniParc:UPI0002544A95 | UniProt:M4EXG8 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT4G15730 (E=5e-220) | zinc ion binding
Coordinates
chrA01:+:11538442..11542857
Molecular Weight (calculated)
102769.0 Da
IEP (calculated)
8.920
GRAVY (calculated)
-0.577
Length
936 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESYELEEG EFNCSANYDL ELDLSYIDKK IENVLGDLQK KFELGSLDMF GPQVYKYGSF LPTYKRSPAV PPCQRSSMEN NNAQRFPNNL PVKNVVQKIQ
101: SLPATSCKPA SIQDSKTNQS SGSLLPQAPE KVTIKKEDAR VPGSDSSDHK PIRLRIKMGS KILSQKVTMV CKDLGLDDSP TRNSHDGISR MLPHTSLEKT
201: CESPSRILQD LTAIPVPEDL LMSPLPESLL NLKDKEKRYT LLGNEPVAKP GKVPFVQTQN KFSDVLGCGE TPSGRRKRKA VDCFNATTLN ATSSIGEVKK
301: QKVCSTGALA RESTTCGINS TSDGFTRKSN LQKVIKKDVE SDPRVAIAKS NRMKVVGKHA EKEKEIYPIK LKQNSSKSSY GDKVLSKMPS KDTANKADFA
401: LPPASTSLDL DSWAECDTCK KWRLLPFSEN PDKLPDKWVC SMQTWLPGMN HCRISQEETT NAIISIHGTK VHGPETSNAD KSYHQSLTSG SLPNLIERKP
501: QGVSSKSMVD AAKPTKSTSH VLKIKNIKLP LKTCNAAQIS TDQKAKGKSA GTGIQIKIKK EKDGDNQESE SSKQIKTGDG NKLSRDLKAE EIHCKRDLDC
601: TPAERKTKRH DNDLYPSDVE RATKKRLLKA TTGSGSLCIK AHGIINTPAR KFGDLSCSSL KTFLENRAGV TNVNAITHET MDRSSKSAND ILQEAEKLKK
701: LAGCFKSSGF DNEYKEVNFD AALRFLLGAS IMEMSSTEKV EDGRMSHVEA YHTAAKLSES CAHQYETKKE MSAAALAYKC VEVACMRVVY CRSLGLSGEL
801: NELQKMVQMT PQGESPSSSA SDIDSFCHQG VIDKSAKTKR GLSHGVGTLL PIARNHQNFV PLLEVTESMN LAMEASAKSQ QALGAVTVVT SEETLHEDCV
901: SAIKKVVDFS FHDVEALIQM IEVARDVLRS SKVRGP
101: SLPATSCKPA SIQDSKTNQS SGSLLPQAPE KVTIKKEDAR VPGSDSSDHK PIRLRIKMGS KILSQKVTMV CKDLGLDDSP TRNSHDGISR MLPHTSLEKT
201: CESPSRILQD LTAIPVPEDL LMSPLPESLL NLKDKEKRYT LLGNEPVAKP GKVPFVQTQN KFSDVLGCGE TPSGRRKRKA VDCFNATTLN ATSSIGEVKK
301: QKVCSTGALA RESTTCGINS TSDGFTRKSN LQKVIKKDVE SDPRVAIAKS NRMKVVGKHA EKEKEIYPIK LKQNSSKSSY GDKVLSKMPS KDTANKADFA
401: LPPASTSLDL DSWAECDTCK KWRLLPFSEN PDKLPDKWVC SMQTWLPGMN HCRISQEETT NAIISIHGTK VHGPETSNAD KSYHQSLTSG SLPNLIERKP
501: QGVSSKSMVD AAKPTKSTSH VLKIKNIKLP LKTCNAAQIS TDQKAKGKSA GTGIQIKIKK EKDGDNQESE SSKQIKTGDG NKLSRDLKAE EIHCKRDLDC
601: TPAERKTKRH DNDLYPSDVE RATKKRLLKA TTGSGSLCIK AHGIINTPAR KFGDLSCSSL KTFLENRAGV TNVNAITHET MDRSSKSAND ILQEAEKLKK
701: LAGCFKSSGF DNEYKEVNFD AALRFLLGAS IMEMSSTEKV EDGRMSHVEA YHTAAKLSES CAHQYETKKE MSAAALAYKC VEVACMRVVY CRSLGLSGEL
801: NELQKMVQMT PQGESPSSSA SDIDSFCHQG VIDKSAKTKR GLSHGVGTLL PIARNHQNFV PLLEVTESMN LAMEASAKSQ QALGAVTVVT SEETLHEDCV
901: SAIKKVVDFS FHDVEALIQM IEVARDVLRS SKVRGP
0001: MGEDYELEEG EMNCSSDEAV VDLDVDLSYI DKKVQNVLGH LQKGFGEEAR DRFGPEIFDY GSFLPTYKRL PAVPSCQRSS LGNHAVQRIS NSLPGKNVVQ
0101: KFQSPPATSC KLVRNQDPQN YQTSGSLLAQ APGKVPINKG NARTPANDLP HNKPIRVRIK MGSEILSQSV AMVCKDLGLD GSPNSPPRIS QDDSSRMLPH
0201: TSLGKTSESP SRILQEMTAI SVPEDLLMSP LPDSLLLVKD KKKQYTLLDN QPMIKTGKKS SIQIQNKFSD VLCCEKTPIG RRRKEVDCFH ATTWNETKKH
0301: KVLSTGQLAR DNSACGLGGA SLTTDGFTTK SNLQEGCRKD GESDPRVANK IKFVGLHAVK EKKTCPTKLQ QNRSKYRIGD KVLSKMPLKD AAYIGHNSMD
0401: TGFDFAVAPS STSVDLDYWA QCESCEKWRL LPYDLNTEKL PDKWLCSMQT WLPGMNHCGV SEEETTNAIK SFHASEGHGP DTGVKLLSDV RNADKIYQPL
0501: TSGSLPNPIE KKSNVEDLSQ GVSSNILVDA AKPMRSNPHI FKNKNMKLPG ETPTATQISA DLSHDFFQDK IDQKAKRRAA GAGCQIKVKK KKEADKEESD
0601: GSKHIKTGDG NKLARVIKAE EIHWNQDPKW TPAERKRKRH DNDFCTLNVE RDPKKRLLVS KKKPDHKPQL ITASGSLCTK AQGNINSTVR KIRLMGYKQG
0701: KDGKNSKLFA DGEENEPSME KAVTTKISVH ESKANQRNEL FQADCFQEHL NGDASCRYFS GGSGQISGIE TSNSSKVLGS HKSGRMYVEE VKASPVESVS
0801: SSPARSSCPT NDILQEAEKL RKLADCFKSS GFEYEYKEIN FKAALRFLLG ASVLEMCSTD NVEVGKMSHI EAYHTAAKLS ESCAHQYETS QEMAAATLAY
0901: KCTEVACMRL VYGRSLGLSG EWNELQKMVQ MTPQGESPSS SASDVDSFNH QGVIKKSAKT RRGLSHVAGN LLPVARSQLN FVPLLDFTGS MNLAMEASAK
1001: SQNAFKAVTD TSEERKHGDC ISAIKKVVDF SFHDVEALIK MIEVAMDALS SSRFGGPKC
0101: KFQSPPATSC KLVRNQDPQN YQTSGSLLAQ APGKVPINKG NARTPANDLP HNKPIRVRIK MGSEILSQSV AMVCKDLGLD GSPNSPPRIS QDDSSRMLPH
0201: TSLGKTSESP SRILQEMTAI SVPEDLLMSP LPDSLLLVKD KKKQYTLLDN QPMIKTGKKS SIQIQNKFSD VLCCEKTPIG RRRKEVDCFH ATTWNETKKH
0301: KVLSTGQLAR DNSACGLGGA SLTTDGFTTK SNLQEGCRKD GESDPRVANK IKFVGLHAVK EKKTCPTKLQ QNRSKYRIGD KVLSKMPLKD AAYIGHNSMD
0401: TGFDFAVAPS STSVDLDYWA QCESCEKWRL LPYDLNTEKL PDKWLCSMQT WLPGMNHCGV SEEETTNAIK SFHASEGHGP DTGVKLLSDV RNADKIYQPL
0501: TSGSLPNPIE KKSNVEDLSQ GVSSNILVDA AKPMRSNPHI FKNKNMKLPG ETPTATQISA DLSHDFFQDK IDQKAKRRAA GAGCQIKVKK KKEADKEESD
0601: GSKHIKTGDG NKLARVIKAE EIHWNQDPKW TPAERKRKRH DNDFCTLNVE RDPKKRLLVS KKKPDHKPQL ITASGSLCTK AQGNINSTVR KIRLMGYKQG
0701: KDGKNSKLFA DGEENEPSME KAVTTKISVH ESKANQRNEL FQADCFQEHL NGDASCRYFS GGSGQISGIE TSNSSKVLGS HKSGRMYVEE VKASPVESVS
0801: SSPARSSCPT NDILQEAEKL RKLADCFKSS GFEYEYKEIN FKAALRFLLG ASVLEMCSTD NVEVGKMSHI EAYHTAAKLS ESCAHQYETS QEMAAATLAY
0901: KCTEVACMRL VYGRSLGLSG EWNELQKMVQ MTPQGESPSS SASDVDSFNH QGVIKKSAKT RRGLSHVAGN LLPVARSQLN FVPLLDFTGS MNLAMEASAK
1001: SQNAFKAVTD TSEERKHGDC ISAIKKVVDF SFHDVEALIK MIEVAMDALS SSRFGGPKC
Arabidopsis Description
At4g15730 [Source:UniProtKB/TrEMBL;Acc:Q8GY51]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.