Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39393 | Sorghum | mitochondrion | 69.89 | 71.25 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.44 | 50.0 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 29.16 | 42.93 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.68 | 40.35 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.69 | 40.0 |
| Zm00001d022481_P019 | Maize | nucleus | 40.95 | 35.09 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.27 | 33.7 |
| Zm00001d007121_P024 | Maize | nucleus | 38.9 | 33.35 |
| PGSC0003DMT400005780 | Potato | nucleus | 7.03 | 30.38 |
| PGSC0003DMT400039034 | Potato | nucleus | 7.03 | 30.28 |
| PGSC0003DMT400039039 | Potato | nucleus | 7.03 | 29.91 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.96 | 29.59 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.96 | 29.32 |
| Solyc08g067490.1.1 | Tomato | nucleus | 6.59 | 29.13 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.89 | 29.01 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 28.13 | 27.14 |
| CDX89924 | Canola | nucleus | 17.88 | 25.47 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.91 | 25.28 |
| Solyc08g067590.1.1 | Tomato | nucleus | 2.2 | 25.0 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 29.6 | 24.57 |
| CDY18138 | Canola | nucleus | 17.07 | 24.47 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 28.35 | 24.42 |
| Zm00001d010490_P005 | Maize | nucleus | 25.2 | 24.19 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.22 | 23.66 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 27.91 | 23.52 |
| CDX76670 | Canola | nucleus | 22.05 | 23.42 |
| CDY32489 | Canola | nucleus | 18.39 | 23.35 |
| CDY37451 | Canola | nucleus | 17.73 | 23.34 |
| CDY54298 | Canola | nucleus | 16.04 | 23.3 |
| Bra032575.1-P | Field mustard | nucleus | 11.94 | 23.25 |
| Bra003514.1-P | Field mustard | nucleus | 22.27 | 23.01 |
| CDX67908 | Canola | nucleus | 22.05 | 22.99 |
| Bra007709.1-P | Field mustard | nucleus | 21.83 | 22.98 |
| CDY11456 | Canola | nucleus | 21.83 | 22.98 |
| CDY25123 | Canola | nucleus | 22.12 | 22.86 |
| CDY66331 | Canola | nucleus | 15.6 | 22.76 |
| Bra033505.1-P | Field mustard | nucleus | 15.46 | 22.54 |
| AT3G62900.2 | Thale cress | nucleus | 23.15 | 22.52 |
| PGSC0003DMT400005776 | Potato | nucleus | 4.25 | 22.48 |
| AT4G15730.1 | Thale cress | nucleus | 16.63 | 21.44 |
| KRG96403 | Soybean | nucleus | 25.79 | 20.94 |
| Solyc06g008720.2.1 | Tomato | nucleus | 19.41 | 20.83 |
| KRH68140 | Soybean | nucleus | 25.49 | 20.83 |
| AT1G02990.4 | Thale cress | nucleus | 19.27 | 20.58 |
| Solyc09g074670.2.1 | Tomato | nucleus | 24.76 | 20.39 |
| KRH37127 | Soybean | nucleus | 24.32 | 19.83 |
| KRH12132 | Soybean | nucleus | 24.47 | 19.75 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 18.9 | 19.69 |
| KRH50884 | Soybean | nucleus | 23.08 | 19.59 |
| KRH02231 | Soybean | nucleus | 22.71 | 19.08 |
| Solyc01g067600.2.1 | Tomato | nucleus | 22.71 | 18.79 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 21.9 | 18.37 |
| Bra033364.1-P | Field mustard | nucleus | 14.21 | 12.61 |
Protein Annotations
| EnsemblPlants:Zm00001d029134_P004 | EnsemblPlants:Zm00001d029134_T004 | EnsemblPlantsGene:Zm00001d029134 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 |
| PFAM:PF07496 | PFscan:PS51050 | ProteinID:ONL98020.1 | ProteinID:ONL98025.1 | SEG:seg | UniParc:UPI0008439021 |
| UniProt:A0A1D6K2Y1 | MapMan:35.2 | : | : | : | : |
Description
CW-type Zinc Finger
Coordinates
chr1:-:59846904..59876808
Molecular Weight (calculated)
149047.0 Da
IEP (calculated)
8.233
GRAVY (calculated)
-0.583
Length
1365 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLFRPVPSAA GRITQSKTTA GGISGTADER ERPERGKNSY CDEETQPTNR PRPPSPSRHG RPTYQRDTAT ALRPNNATRP TSIETSTGRN LSVTVREPSP
0101: ELGRSVLVQL VGRGMQSLRG AQRECAGPRG RRVAGDTEEL EEGEACSDAD GEAFVDPDVA FSYIDEKLQH VLGHFQKEFE GEVSAENLGS KFGGYGSFLP
0201: TYQRSPLLPQ SESPHIALNI SMSGSPYQPS AERMDQNPST VAVEPISRNN GFGAPSASDS IKKKKFLSTN DEESIAGSDS LDTSLSGSDS KSLKFQTKVC
0301: LSNDLPRENA VIYSGLGLDI SPRSSMEESP NGLGGLSPEC SNVPFESPRT ILQVMTCLPV PGGFLLSPLH GNLLQLRNKV APVLKNLETH LDMENVSRAL
0401: EGRSQSFHPL GLIRGNVTKQ MRPCSKKKVA VDTKTSKYKG DASATMNNEV NIQVPASQKE KMNTNNKNEF EVGSARKEIP ASVKHGELYM QPASSVSTMN
0501: AYHVPAPVVI EDHWVRCDIC HKLRLLPYGM NPSMLPKKWK CTMLHWLPGM NRCDISEDET TGALNALFAI PATATTLSSG SPHTAVTGGI MERNKAYPKL
0601: KTKIRIDQDE QKSYKKTKIE AWHQIDRGQD HRCDSDGVEV PDEHKALLAK AKAMKGSHET DDMSLCKKNI ASGYDSSENV NNVNALDVPF HSEKKEHPSD
0701: VDILDLSCKK NAVKKLEIQL NSLHCISNGP QKNLKEKKSN KLKSKEMASK EDSRHGKVQH ADAVLSSLGH LNYELGADNK FVTGKESLSE QLETLPAKQV
0801: LDLAEAPGRD VAYLQSSTTV SSSSSKISSS RRNTNSQEAN DSPIKSASSL PLRDFSIKMI SGNRKDGTVD ASLGNTHNLA RYQNSEVIAL NYGQQAGNFE
0901: GDQVAGEPNF HGSLQGISDS NIKEIPQSAG AQVSNITGFG RSLDNSLPEA SCREDLTVND TVVGRGDHQL CSGEQKDFNM EVRLPLPDQH CFGRINTESG
1001: SVRHESKNIE VRQGSGTAQR LGMLFKKEKS HLRILNRDIQ NHVNQVVNFP LKGGKQKVCP TSVKSESLKM KAKLVRFNVE TGVQHGSVKQ VTSSTLDTSP
1101: MRKDGSMITF ALKEARDLKH KANDLKNKGQ ELESTGLYFE AALKFLHVAF LLETPSFDIS RQGGGGRSMK MYSETAKLCK HIVCYMLNEV LSLASFCAYE
1201: YERCKKMASA ALAYKCVEVA YLKAAYYKHR TATKDQQELQ AAVQITRGEP PSPSALDIDN LNSHGSSNAS SLKGDNSPHV PGNHLPLAIH NQAQLLRLLA
1301: YTNDMNLAFD ATRKAESVIA SATGCPERGV VGDGLASVKA VLDLNFNNVN ELLRLVRVSM ESISS
0101: ELGRSVLVQL VGRGMQSLRG AQRECAGPRG RRVAGDTEEL EEGEACSDAD GEAFVDPDVA FSYIDEKLQH VLGHFQKEFE GEVSAENLGS KFGGYGSFLP
0201: TYQRSPLLPQ SESPHIALNI SMSGSPYQPS AERMDQNPST VAVEPISRNN GFGAPSASDS IKKKKFLSTN DEESIAGSDS LDTSLSGSDS KSLKFQTKVC
0301: LSNDLPRENA VIYSGLGLDI SPRSSMEESP NGLGGLSPEC SNVPFESPRT ILQVMTCLPV PGGFLLSPLH GNLLQLRNKV APVLKNLETH LDMENVSRAL
0401: EGRSQSFHPL GLIRGNVTKQ MRPCSKKKVA VDTKTSKYKG DASATMNNEV NIQVPASQKE KMNTNNKNEF EVGSARKEIP ASVKHGELYM QPASSVSTMN
0501: AYHVPAPVVI EDHWVRCDIC HKLRLLPYGM NPSMLPKKWK CTMLHWLPGM NRCDISEDET TGALNALFAI PATATTLSSG SPHTAVTGGI MERNKAYPKL
0601: KTKIRIDQDE QKSYKKTKIE AWHQIDRGQD HRCDSDGVEV PDEHKALLAK AKAMKGSHET DDMSLCKKNI ASGYDSSENV NNVNALDVPF HSEKKEHPSD
0701: VDILDLSCKK NAVKKLEIQL NSLHCISNGP QKNLKEKKSN KLKSKEMASK EDSRHGKVQH ADAVLSSLGH LNYELGADNK FVTGKESLSE QLETLPAKQV
0801: LDLAEAPGRD VAYLQSSTTV SSSSSKISSS RRNTNSQEAN DSPIKSASSL PLRDFSIKMI SGNRKDGTVD ASLGNTHNLA RYQNSEVIAL NYGQQAGNFE
0901: GDQVAGEPNF HGSLQGISDS NIKEIPQSAG AQVSNITGFG RSLDNSLPEA SCREDLTVND TVVGRGDHQL CSGEQKDFNM EVRLPLPDQH CFGRINTESG
1001: SVRHESKNIE VRQGSGTAQR LGMLFKKEKS HLRILNRDIQ NHVNQVVNFP LKGGKQKVCP TSVKSESLKM KAKLVRFNVE TGVQHGSVKQ VTSSTLDTSP
1101: MRKDGSMITF ALKEARDLKH KANDLKNKGQ ELESTGLYFE AALKFLHVAF LLETPSFDIS RQGGGGRSMK MYSETAKLCK HIVCYMLNEV LSLASFCAYE
1201: YERCKKMASA ALAYKCVEVA YLKAAYYKHR TATKDQQELQ AAVQITRGEP PSPSALDIDN LNSHGSSNAS SLKGDNSPHV PGNHLPLAIH NQAQLLRLLA
1301: YTNDMNLAFD ATRKAESVIA SATGCPERGV VGDGLASVKA VLDLNFNNVN ELLRLVRVSM ESISS
0001: MEESELEEGE ACSYNITNEY AGSIDPDNDL SYIDEKLQHI LGHFQKDFEG GVSAENLGAK YGGYGSFLPT YQRSPVWSHP KTPAKPQSST GTRSPNNLLG
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
0101: ESQSGNAASS SVPKKAKSGL ASSGNPKKSV KSKKPSSSAR MESATKKPCV FSKQNSLKLR IKMVPDGLST EKNAAAIYSG LGLDVSPSLS LDNNSLSGSE
0201: GMNEEPQGYS PTESPTSILN VMTSLPVDHC QFLSPLSEDL IRFIEREKSE KGYKYTSPSR LFTASSSAMA YGLEPQKSGE KPSVEKKKKM VERSSFSAET
0301: NVRSKKGLFD STDAITKESM ETNTLYPTFA EKETASSKLF DASKENYNGT VRGEMVGDVD RRLWGLTRHK DLGAHHENPK TISAGSVRED KKAKLGDNEA
0401: SGYPRKVGKY KGSKASDSVK KESSASKAKS GHKVELEHPL RKQKYDQIEQ EPPSSSKFKE QQTSVVFETK LNGQAEKKEV VAVKPQSDSK KAEDTYKDFF
0501: GDIGDSEEEE EQDVKDLRIS EKGLPPLEDM PEKSSLPLVE PQNVGPEPML RKLGSDASLP KANPVIIQEH WVACDKCGKW RLLPFGVFPE DLPEKWMCTM
0601: LNWLPGVNYC NVPEDETTKA LYAMYQIPVP ENQASMQSNP SGPKPQFTQG DDNTKKKKKG FKKIDNGMDK EGARTAETNK TIQTSSRNGI QNSQGLGDLA
0701: EDERQIHKQK EKGKAVDHLS DESKSLKANN KRKTDLESSM LAKKMKIESF LFPDESEYGN GRPTSSSGVP ITSADIKPKP RVSSKMPKEE GGASDTGNSN
0801: STGGIKKRKL RESHGSRIYS ENENHERKKA RVRKEEKEPS YSQGNGKLEK KNRSHSKIEY ANVQNSIAAT SSSSKISDSH KPRNSSREAK CSPVESVSSS
0901: PMRLSNPEKR ISVSKKKEES YDANVFAAGS LKKFSDGEGE DDGGSDRSQS QMKDKHGSHE SSVLDIWDNK GSLKAKERAD PSLDANFENG GHKTLPRKLD
1001: HILGEGKQSS DHHRRSNDSL AKKSGKGSSS RSKEKSQSIR SDSRDGPRHI EKKIYDGSPD SRADMIVRPN IPKPHDSERI PERSNIADLA SPSRPPSRGV
1101: QGDSSMLSVR KKVDKCSTSA GNNNIQADDV TKATAQIRRK SEPSPSPLRK EITSAQAAHN TLKEAKDLKH TADRLKNSVS NLEHIELYFQ ACLKFLHGAF
1201: LLEMSSNESA RQGETMVQSM KIYSSTANLC GFCAHEYEKS KDMGAAALAY KCMEVAYMRV VNSSYTSANR YRNELQTSLQ MVPPGESPSS SASDVDNVNH
1301: PAAVDRVGTS RGISSPLVAG NHVISAQNRS NLLRLLQFAQ DVNLSMDASR KSRVALTACI ENSGEAQQQG EGIISIKSAL DYNFQDMEGL LRLVKLAMKA
1401: NNR
Arabidopsis Description
CW-type Zinc Finger [Source:UniProtKB/TrEMBL;Acc:F4IZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.