Factsheet for Zm00001d016478_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005151_P004
Zm00001d018301_P001
Zm00001d029179_P001
Zm00001d034851_P001
Zm00001d035282_P001
Zm00001d037282_P001
Zm00001d042264_P006
Zm00001d042726_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04950.1	Zm00001d042726_P001	AT5G09830.1	21798944
AT4G04950.1	Zm00001d005151_P004	AT5G13280.1	21798944
AT4G04950.1	Zm00001d018301_P001	AT5G13280.1	21798944
AT4G04950.1	Zm00001d029179_P001	AT5G13280.1	21798944
AT4G04950.1	Zm00001d034851_P001	AT5G13280.1	21798944
AT4G04950.1	Zm00001d035282_P001	AT5G13280.1	21798944
AT4G04950.1	Zm00001d037282_P001	AT5G13280.1	21798944
AT4G04950.1	Zm00001d042264_P006	AT5G13280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006437_P001	Maize	cytosol	78.9	77.64
Zm00001d011577_P001	Maize	cytosol	82.14	51.74
Zm00001d013927_P001	Maize	extracellular	83.44	51.5
KXG38234	Sorghum	cytosol	82.47	50.9
Zm00001d032546_P001	Maize	extracellular	78.9	48.7
Os10t0500700-01	Rice	cytosol	75.0	47.05
Zm00001d006222_P001	Maize	cytosol	75.0	46.29
TraesCS1D01G166900.1	Wheat	cytosol	72.08	45.4
TraesCS1A01G168900.1	Wheat	cytosol	71.75	45.19
TraesCS1B01G188000.1	Wheat	cytosol	71.43	44.99
GSMUA_Achr8P11270_001	Banana	cytosol	55.84	39.18
GSMUA_Achr2P10580_001	Banana	cytosol	60.06	38.38
AT4G04950.1	Thale cress	cytosol	59.09	37.3
Bra000810.1-P	Field mustard	cytosol	57.47	37.18
VIT_10s0597g00030.t01	Wine grape	cytosol	59.09	36.99
CDX90882	Canola	cytosol	57.14	36.9
KRH20463	Soybean	nucleus	57.47	36.12
CDY21322	Canola	cytosol	57.47	34.84
CDY16635	Canola	cytosol	29.55	29.64
Bra029532.1-P	Field mustard	cytosol	31.82	28.91
Solyc02g078360.2.1	Tomato	cytosol	27.27	28.38
CDY67888	Canola	cytosol	31.49	27.56
AT4G32580.1	Thale cress	cytosol	6.49	12.5
Zm00001d034857_P001	Maize	plastid	6.82	12.21
Zm00001d012845_P001	Maize	plastid	6.49	11.63
Zm00001d025657_P001	Maize	mitochondrion	6.17	9.84
Zm00001d005094_P001	Maize	plastid	9.09	9.62
Zm00001d044606_P001	Maize	plastid	8.12	8.56
Zm00001d008736_P001	Maize	mitochondrion	4.22	7.78

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	UniProt:A0A1D6H817	ProteinID:AQK70891.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114
InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354
SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0008446176	EnsemblPlantsGene:Zm00001d016478	EnsemblPlants:Zm00001d016478_P001
EnsemblPlants:Zm00001d016478_T001	:	:	:	:	:

Description

Thioredoxin superfamily protein

Coordinates

chr5:-:164218446..164234669

Molecular Weight (calculated)

33888.8 Da

IEP (calculated)

4.698

GRAVY (calculated)

-0.301

Length

308 amino acids

Sequence
(BLAST)

001: MSLEEAKLEM ATLLQQQASK SLASARRDGV LEQRSVRDLM FGGADEEIMV LRVELLAAQK GVNILKQEGV KFGSFDILTD NDVREGMKKF SNWPTVPQLY
101: CKGELLGGCD IVIAMHDSGE LKDVFEEHNI PLKPQGSKNE EAGQPESATE KGGAVAEPIG LTDAQKARLE SLINSSPVMV FIKGTPEEPR CGFSGKLVHI
201: LKQDNIPFSS FDILSDDEVR QGLKVLSNWP SYPQLYIKGE LVGGSDIVME MHKSGELKKV LSEKGVIPKE SLEDRLKSLL YYKSELIGGC DIVLEMEKSG
301: ELKSTLSE

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.