Factsheet for Zm00001d005094_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044606_P001	Maize	plastid	93.47	93.15
EES16486	Sorghum	cytosol	46.05	91.16
EES09081	Sorghum	plastid	88.32	89.55
Os12t0175500-01	Rice	plastid	80.41	82.11
TraesCS5B01G152900.1	Wheat	plastid	78.69	79.24
TraesCS5D01G159600.1	Wheat	plastid	77.66	78.2
HORVU5Hr1G048120.8	Barley	cytosol, plastid	78.01	71.16
VIT_08s0105g00490.t01	Wine grape	plastid	60.82	59.6
TraesCS5A01G154700.1	Wheat	mitochondrion	78.69	58.87
PGSC0003DMT400011370	Potato	plastid	59.45	58.45
Solyc09g005620.2.1	Tomato	plastid	58.08	57.88
GSMUA_Achr5P14210_001	Banana	plastid	63.57	56.92
CDY14473	Canola	plastid	56.01	56.6
AT2G38270.1	Thale cress	plastid	56.36	55.97
CDY07744	Canola	plastid	56.01	55.82
Bra000047.1-P	Field mustard	plastid	56.36	55.78
KRH65709	Soybean	nucleus, plastid	54.3	53.56
KRH75953	Soybean	nucleus	53.61	48.75
Zm00001d034857_P001	Maize	plastid	21.31	36.05
Zm00001d012845_P001	Maize	plastid	20.96	35.47
Zm00001d008736_P001	Maize	mitochondrion	17.87	31.14
Zm00001d025657_P001	Maize	mitochondrion	18.9	28.5
Zm00001d006437_P001	Maize	cytosol	18.9	17.57
Zm00001d013927_P001	Maize	extracellular	24.05	14.03
Zm00001d032546_P001	Maize	extracellular	23.71	13.83
Zm00001d011577_P001	Maize	cytosol	19.24	11.45
Zm00001d006222_P001	Maize	cytosol	17.18	10.02
Zm00001d016478_P001	Maize	cytosol	9.62	9.09

Protein Annotations

EntrezGene:100193022	Gene3D:3.40.1440.10	Gene3D:3.40.30.10	MapMan:35.1	UniProt:B4FDI5	EMBL:BT035173
InterPro:GIY-YIG_endonuc_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109
InterPro:IPR035901	InterPro:Monothiol_GRX-rel	ProteinID:ONM20243.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293
PANTHER:PTHR10293:SF45	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00017B6813	EnsemblPlantsGene:Zm00001d005094	EnsemblPlants:Zm00001d005094_P001
EnsemblPlants:Zm00001d005094_T001	SEG:seg	:	:	:	:

Description

Bifunctional monothiol glutaredoxin-S16 chloroplastic

Coordinates

chr2:+:158026680..158029187

Molecular Weight (calculated)

31177.3 Da

IEP (calculated)

8.858

GRAVY (calculated)

-0.152

Length

291 amino acids

Sequence
(BLAST)

001: MAMASTATAA ASLRLAFPLL SSPASSSSSS NTLRFPLRRR SAARPIAVTA FKKLSEASPV PIPQEPTEPL LVDEDALPPK AGVYGVYDPA GELQFVGISR
101: NVRASIEGHR RKVPANLCAS VKVAVSDEET PDRSALNNAW KSWMQEHIAA TGKAPPGNVA GNNTWVGGPQ RPPDLRLTPG RHVQLTVPLE QLIHRLVKEN
201: RVVAFIKGSR SAPQCGFSQR VVGILEGHGV DFVTVDVLDE EHNHGLRETL KAYSSWPTFP QVFVGGELVG GCDIVSSMAE KGELAALLIQ K

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.