Factsheet for PGSC0003DMT400011370

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38270.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT2G38270.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT2G38270.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT2G38270.1	PGSC0003DMT400069515	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005620.2.1	Tomato	plastid	95.27	96.58
EES16486	Sorghum	cytosol	38.18	76.87
VIT_08s0105g00490.t01	Wine grape	plastid	71.62	71.38
KRH65709	Soybean	nucleus, plastid	67.57	67.8
CDY14473	Canola	plastid	62.5	64.24
AT2G38270.1	Thale cress	plastid	62.84	63.48
CDY07744	Canola	plastid	62.5	63.36
Bra000047.1-P	Field mustard	plastid	62.84	63.27
Os12t0175500-01	Rice	plastid	60.81	63.16
KRH75953	Soybean	nucleus	67.23	62.19
TraesCS5B01G152900.1	Wheat	plastid	60.14	61.59
EES09081	Sorghum	plastid	59.46	61.32
TraesCS5D01G159600.1	Wheat	plastid	59.8	61.25
Zm00001d005094_P001	Maize	plastid	58.45	59.45
Zm00001d044606_P001	Maize	plastid	58.45	59.25
HORVU5Hr1G048120.8	Barley	cytosol, plastid	60.81	56.43
GSMUA_Achr5P14210_001	Banana	plastid	61.15	55.69
TraesCS5A01G154700.1	Wheat	mitochondrion	59.46	45.24
PGSC0003DMT400035470	Potato	plastid	20.27	33.9
PGSC0003DMT400073383	Potato	mitochondrion	16.89	29.41

Protein Annotations

EntrezGene:102588568	Gene3D:3.40.1440.10	Gene3D:3.40.30.10	MapMan:35.1	InterPro:GIY-YIG_endonuc_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:IPR035901	UniProt:M0ZZG9
InterPro:Monothiol_GRX-rel	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400004454	PGSC:PGSC0003DMG400004454	EnsemblPlants:PGSC0003DMT400011370	PFscan:PS51354
PANTHER:PTHR10293	PANTHER:PTHR10293:SF45	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI00029635D1
RefSeq:XP_006366945.1	:	:	:	:	:

Description

Glutaredoxin, grx [Source:PGSC_GENE;Acc:PGSC0003DMG400004454]

Coordinates

chr9:+:7830574..7835931

Molecular Weight (calculated)

32645.8 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.298

Length

296 amino acids

Sequence
(BLAST)

001: MATFNISFLT QPHSTLPIFS SQNTPSFSSY SLPKTSFLFP SITLRPKSRT TTRHHASIVV AALKKLSETD PLTVPLQPDE ISGSFPKESG VYAVYDTNGD
101: LQFVGISRNI AASVLSHKNS VPQLCSSVKV GVVDEPDRTA LTESWKSWME EHIATNGKVP PGNEPGNSTW VRQPPKKKAD LRLTPGRHVQ LTVPLEDLID
201: RLVKENKVVA FIKGSRSAPQ CGFSQRVVAI LESEGVDYES IDVLDEEYNS GLRETLKNYS NWPTFPQIFV KGELVGGCDI LTSMYEKGEL ASLFKS

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.