Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g096780.1.1 | Tomato | nucleus | 93.16 | 96.46 |
| PGSC0003DMT400001475 | Potato | plastid | 79.49 | 78.81 |
| PGSC0003DMT400001476 | Potato | plastid | 69.23 | 72.32 |
| PGSC0003DMT400069515 | Potato | cytosol | 65.81 | 68.14 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 53.85 | 52.5 |
| Bra017974.1-P | Field mustard | cytosol | 38.46 | 52.33 |
| AT5G24655.1 | Thale cress | cytosol | 40.17 | 51.09 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 40.17 | 50.0 |
| KRH64261 | Soybean | nucleus | 51.28 | 49.59 |
| Bra017975.1-P | Field mustard | cytosol | 40.17 | 48.45 |
| CDY08148 | Canola | cytosol | 38.46 | 48.39 |
| AT3G49580.1 | Thale cress | cytosol, nucleus, plastid | 38.46 | 47.87 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 55.56 | 47.45 |
| AT3G49570.1 | Thale cress | cytosol | 38.46 | 46.39 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 36.75 | 46.24 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 36.75 | 46.24 |
| Bra009783.1-P | Field mustard | cytosol, nucleus, plastid | 36.75 | 46.24 |
| CDY08146 | Canola | cytosol | 37.61 | 45.36 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 37.61 | 45.36 |
| Bra020466.1-P | Field mustard | nucleus | 37.61 | 45.36 |
| CDY05402 | Canola | nucleus | 36.75 | 44.33 |
| KRH16959 | Soybean | nucleus | 43.59 | 43.59 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001474 | EnsemblPlantsGene:PGSC0003DMG400000545 | EntrezGene:102598720 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0033554 | ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | PGSC:PGSC0003DMG400000545 | RefSeq:XP_006347546.1 |
| SEG:seg | UniParc:UPI0002964B4E | UniProt:M0ZIJ0 | MapMan:35.2 | : | : |
Description
UP-9A [Source:PGSC_GENE;Acc:PGSC0003DMG400000545]
Coordinates
chr3:+:47115190..47115883
Molecular Weight (calculated)
13600.2 Da
IEP (calculated)
5.104
GRAVY (calculated)
-0.773
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSTIAVPSG KANPHRREVS AVPESEVLRR RNEELEKELK KSIEREEKMR EELQKTWERL RVAEEAEERL CSQLGELEAE AVDQARAYRT RVINLMDQLS
101: LAQKFLESAS ISVPNFQ
101: LAQKFLESAS ISVPNFQ
1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP
Arabidopsis Description
LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.