Factsheet for PGSC0003DMT400016192

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400008772
PGSC0003DMT400009054
PGSC0003DMT400012249
PGSC0003DMT400017657
PGSC0003DMT400019235
PGSC0003DMT400026313
PGSC0003DMT400037920
PGSC0003DMT400061758
PGSC0003DMT400065677
PGSC0003DMT400069515
PGSC0003DMT400069582
PGSC0003DMT400073760
PGSC0003DMT400074781

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32840.1	PGSC0003DMT400037920	AT2G47710.1	21798944
AT2G32840.1	PGSC0003DMT400061758	AT2G47710.1	21798944
AT2G32840.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT2G32840.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT2G32840.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT2G32840.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT2G32840.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT2G32840.1	PGSC0003DMT400009054	AT3G50910.1	21798944
AT2G32840.1	PGSC0003DMT400019235	AT3G54850.1	21798944
AT2G32840.1	PGSC0003DMT400074781	AT3G56270.1	21798944
AT2G32840.1	PGSC0003DMT400073760	AT4G00120.1	21798944
AT2G32840.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT2G32840.1	PGSC0003DMT400026313	AT4G30330.1	21798944
AT2G32840.1	PGSC0003DMT400065677	AT4G30330.1	21798944
AT2G32840.1	PGSC0003DMT400069582	AT4G30330.1	21798944
AT2G32840.1	PGSC0003DMT400008772	AT4G39050.1	21798944
AT2G32840.1	PGSC0003DMT400017657	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g073920.2.1	Tomato	cytosol, plastid	55.59	46.49
VIT_13s0156g00270.t01	Wine grape	cytosol	13.64	30.71
KRH43426	Soybean	cytosol	20.28	21.4
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	12.59	20.81
GSMUA_Achr6P06320_001	Banana	nucleus	7.34	19.63
KRH13875	Soybean	cytosol, nucleus, plastid	19.23	19.1
CDY18271	Canola	plastid	18.18	17.51
CDY52552	Canola	nucleus, plastid	17.83	17.35
Bra005553.1-P	Field mustard	nucleus, plastid	17.83	17.06
AT2G32840.1	Thale cress	nucleus, plastid	19.58	16.62
CDY12159	Canola	nucleus, plastid	17.13	16.5
CDX89775	Canola	plastid	18.88	15.98
Bra015366.1-P	Field mustard	nucleus, plastid	18.88	15.98
EER92590	Sorghum	plastid	15.04	13.92
AT1G04930.2	Thale cress	nucleus, plastid	17.48	13.81
Os03t0234600-00	Rice	plastid	12.24	13.21
HORVU4Hr1G064990.1	Barley	plastid	17.13	12.53
TraesCS4A01G076800.1	Wheat	plastid	16.08	12.23
TraesCS4B01G232900.1	Wheat	plastid	16.08	12.14
TraesCS4D01G234100.1	Wheat	plastid	15.73	11.94
Zm00001d047985_P002	Maize	plastid	15.04	11.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400016192	EnsemblPlantsGene:PGSC0003DMG400006329	PANTHER:PTHR31336	PGSC:PGSC0003DMG400006329	SEG:seg	UniParc:UPI0002963FA8
UniProt:M1A791	MapMan:35.2	:	:	:	:

Description

Extensin [Source:PGSC_GENE;Acc:PGSC0003DMG400006329]

Coordinates

chr1:+:66675424..66685174

Molecular Weight (calculated)

30662.2 Da

IEP (calculated)

10.125

GRAVY (calculated)

-0.588

Length

286 amino acids

Sequence
(BLAST)

001: MALSTPPAPP DPPPTAAANT TITTTDAAIT TGIPTRPIFS NPVRPPTPQP HPPFSLQSSH FPSTQRLPPS SNPSYSQLVL KPPNPDSQPH LHSILYPVAS
101: SGRGFLSKPS NYPNRPVVSH LGSRPTFGLN QMDPGLGQST GVRPSHLQHA LLGSSPTVNS AGPAASAGVL PGAVKGFPVV SSSHHKSQYM DGVRSLPRPL
201: ALAPQDAESP VKKEGDKEEE EEAGESVEHL SPKELLQRHV KRAKRIRSRP EIRKSGRQTD LVFTFQLQLD TGSDALIMNC DEIRSR

Best Arabidopsis Sequence Match ( AT2G32840.1 )
(BLAST)

001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE

Arabidopsis Description

Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.