Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g084540.2.1 | Tomato | cytosol | 95.54 | 95.54 |
| CDY27474 | Canola | cytosol | 30.57 | 75.0 |
| GSMUA_Achr5P00180_001 | Banana | cytosol | 73.25 | 74.68 |
| GSMUA_Achr6P20400_001 | Banana | cytosol | 70.7 | 72.08 |
| Bra004435.1-P | Field mustard | cytosol | 70.7 | 68.52 |
| CDX80128 | Canola | cytosol | 70.7 | 68.52 |
| CDY53014 | Canola | cytosol | 70.7 | 68.52 |
| PGSC0003DMT400037920 | Potato | cytosol | 70.06 | 68.32 |
| Bra000458.1-P | Field mustard | cytosol | 67.52 | 65.43 |
| CDX95730 | Canola | cytosol | 67.52 | 65.43 |
| CDX83322 | Canola | cytosol | 67.52 | 65.43 |
| KRG96437 | Soybean | cytosol | 67.52 | 65.03 |
| AT2G47710.1 | Thale cress | cytosol | 66.88 | 64.81 |
| KRH71566 | Soybean | cytosol | 64.97 | 64.56 |
| CDY55534 | Canola | cytosol | 64.97 | 62.96 |
| Bra021440.1-P | Field mustard | cytosol | 64.97 | 62.96 |
| GSMUA_Achr8P06640_001 | Banana | cytosol | 63.69 | 62.5 |
| PGSC0003DMT400029496 | Potato | cytosol | 62.42 | 62.42 |
| KRH31878 | Soybean | cytosol | 64.33 | 61.59 |
| TraesCS5D01G104200.1 | Wheat | cytosol | 65.61 | 60.95 |
| TraesCS5A01G092000.1 | Wheat | cytosol | 66.24 | 60.47 |
| TraesCS5B01G097600.1 | Wheat | cytosol | 64.97 | 60.35 |
| EES17172 | Sorghum | cytosol | 66.88 | 59.66 |
| Zm00001d023830_P001 | Maize | cytosol, extracellular, mitochondrion | 64.97 | 59.65 |
| Os12t0552500-01 | Rice | cytosol, extracellular, plasma membrane, plastid | 63.69 | 59.17 |
| PGSC0003DMT400021775 | Potato | cytosol | 56.69 | 58.55 |
| HORVU5Hr1G024160.3 | Barley | cytosol | 64.97 | 58.29 |
| Os12t0552400-01 | Rice | cytosol | 57.96 | 56.88 |
| PGSC0003DMT400011994 | Potato | cytosol | 55.41 | 54.38 |
| Zm00001d041638_P001 | Maize | cytosol | 60.51 | 53.98 |
| TraesCS5A01G092100.1 | Wheat | cytosol | 60.51 | 47.26 |
| TraesCS5B01G097500.1 | Wheat | cytosol | 60.51 | 47.26 |
| TraesCS5D01G104300.1 | Wheat | cytosol | 60.51 | 47.26 |
| HORVU5Hr1G024170.1 | Barley | cytosol | 60.51 | 47.03 |
| OQU79284 | Sorghum | mitochondrion | 55.41 | 46.77 |
| PGSC0003DMT400007287 | Potato | cytosol | 40.76 | 38.55 |
| VIT_07s0005g00290.t01 | Wine grape | cytosol | 75.8 | 35.31 |
| PGSC0003DMT400084231 | Potato | cytosol | 35.67 | 31.28 |
| PGSC0003DMT400033576 | Potato | cytosol | 29.94 | 27.33 |
| PGSC0003DMT400080606 | Potato | cytosol | 26.75 | 24.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400061758 | EnsemblPlantsGene:PGSC0003DMG400024035 | EntrezGene:102580875 | Gene3D:3.40.50.620 | GO:GO:0006950 | GO:GO:0008150 |
| InterPro:IPR014729 | InterPro:Rossmann-like_a/b/a_fold | InterPro:Universal_stress_UspA | InterPro:UspA | PANTHER:PTHR31964 | PANTHER:PTHR31964:SF106 |
| PFAM:PF00582 | PGSC:PGSC0003DMG400024035 | PRINTS:PR01438 | RefSeq:XP_006352812.1 | SUPFAM:SSF52402 | UniParc:UPI000294F423 |
| UniProt:M1C7Y9 | MapMan:35.2 | : | : | : | : |
Description
Fiber protein Fb19 [Source:PGSC_GENE;Acc:PGSC0003DMG400024035]
Coordinates
chr6:+:59359342..59360748
Molecular Weight (calculated)
16811.5 Da
IEP (calculated)
8.023
GRAVY (calculated)
0.115
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKPVMVVG MDDSEHSFYA LEWTLEHLFG PSPPPFKLLI VHAKPTATSA IGLAGPGGAD VLPYVEADLR KISSRIAEKA KKICSAKSVN DVVVEIVEGD
101: ARSVLCDAVE KHHASMLVVG SHGYGVLKRT VLGSVSDYCA HHAHCSVMIV KRPKIKA
101: ARSVLCDAVE KHHASMLVVG SHGYGVLKRT VLGSVSDYCA HHAHCSVMIV KRPKIKA
001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
Arabidopsis Description
Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.