Factsheet for GSMUA_Achr8P06640_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P08790_001
GSMUA_Achr3P25610_001
GSMUA_Achr5P00180_001
GSMUA_Achr6P20400_001
GSMUA_Achr7P10730_001
GSMUA_Achr8P06640_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47710.1	GSMUA_Achr11P...	AT2G41760.1	21798944
AT2G47710.1	GSMUA_Achr5P00180_001	AT2G47710.1	21798944
AT2G47710.1	GSMUA_Achr6P20400_001	AT2G47710.1	21798944
AT2G47710.1	GSMUA_Achr8P06640_001	AT2G47710.1	21798944
AT2G47710.1	GSMUA_Achr7P10730_001	AT3G49160.1	21798944
AT2G47710.1	GSMUA_Achr2P08790_001	AT3G58450.1	21798944
AT2G47710.1	GSMUA_Achr3P25610_001	AT3G58450.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00180_001	Banana	cytosol	73.12	75.97
GSMUA_Achr6P20400_001	Banana	cytosol	69.38	72.08
CDY27474	Canola	cytosol	27.5	68.75
KRH71566	Soybean	cytosol	63.75	64.56
Os12t0552500-01	Rice	cytosol, extracellular, plasma membrane, plastid	68.12	64.5
TraesCS5D01G104200.1	Wheat	cytosol	67.5	63.91
TraesCS5B01G097600.1	Wheat	cytosol	67.5	63.91
PGSC0003DMT400061758	Potato	cytosol	62.5	63.69
Zm00001d023830_P001	Maize	cytosol, extracellular, mitochondrion	67.5	63.16
EES17172	Sorghum	cytosol	69.38	63.07
CDY53014	Canola	cytosol	63.75	62.96
CDX80128	Canola	cytosol	63.75	62.96
Bra004435.1-P	Field mustard	cytosol	63.75	62.96
KRH31878	Soybean	cytosol	64.38	62.8
TraesCS5A01G092000.1	Wheat	cytosol	67.5	62.79
HORVU5Hr1G024160.3	Barley	cytosol	68.12	62.29
Solyc06g084540.2.1	Tomato	cytosol	60.62	61.78
Bra000458.1-P	Field mustard	cytosol	62.5	61.73
CDX83322	Canola	cytosol	62.5	61.73
CDX95730	Canola	cytosol	62.5	61.73
AT2G47710.1	Thale cress	cytosol	61.25	60.49
KRG96437	Soybean	cytosol	61.25	60.12
PGSC0003DMT400037920	Potato	cytosol	59.38	59.01
Solyc06g009050.2.1	Tomato	cytosol, nucleus	58.75	58.39
Bra021440.1-P	Field mustard	cytosol	58.75	58.02
CDY55534	Canola	cytosol	58.75	58.02
Os12t0552400-01	Rice	cytosol	57.5	57.5
Zm00001d041638_P001	Maize	cytosol	57.5	52.27
TraesCS5B01G097500.1	Wheat	cytosol	61.88	49.25
TraesCS5A01G092100.1	Wheat	cytosol	61.88	49.25
TraesCS5D01G104300.1	Wheat	cytosol	61.25	48.76
HORVU5Hr1G024170.1	Barley	cytosol	61.25	48.51
OQU79284	Sorghum	mitochondrion	55.0	47.31
GSMUA_Achr4P06800_001	Banana	cytosol	39.38	39.13
GSMUA_Achr3P29470_001	Banana	cytosol	35.62	36.08
GSMUA_Achr1P24830_001	Banana	cytosol	37.5	35.71
VIT_07s0005g00290.t01	Wine grape	cytosol	71.25	33.83
GSMUA_Achr2P08790_001	Banana	cytosol	35.0	30.11
GSMUA_Achr6P02230_001	Banana	cytosol	32.5	29.89
GSMUA_Achr3P25610_001	Banana	cytosol	35.62	29.84
GSMUA_Achr1P26770_001	Banana	cytosol	23.12	22.16

Protein Annotations

EnsemblPlants:GSMUA_Achr8P06640_001	EnsemblPlants:GSMUA_Achr8T06640_001	EnsemblPlantsGene:GSMUA_Achr8G06640_001	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF16
PFAM:PF00582	PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI0002953C17	UniProt:M0TN67	MapMan:35.2

Description

Putative Universal stress protein A-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G06640_001]

Coordinates

chr8:-:4315332..4317772

Molecular Weight (calculated)

17097.8 Da

IEP (calculated)

7.235

GRAVY (calculated)

0.176

Length

160 amino acids

Sequence
(BLAST)

001: MAAEVGKPAM VVGIDDSEHS FYALQWTLRR FFSVADSAFK LVVVHSKPSP ASVVGLAGPG AADVLPFVES DLKKIALLVI EKAKDLCSAF PVGDIQYELV
101: EGDPRNALCD AAEKHQAEIL VVGSHGYGAI KRVVLGSVSD HCAHHAQCTV MIVKKPKPKH

Best Arabidopsis Sequence Match ( AT2G47710.1 )
(BLAST)

001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.