Factsheet for Zm00001d023830_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d023830_P001
Zm00001d034027_P001
Zm00001d038071_P002
Zm00001d041638_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47710.1	Zm00001d038071_P002	AT2G41760.1	21798944
AT2G47710.1	Zm00001d023830_P001	AT2G47710.1	21798944
AT2G47710.1	Zm00001d041638_P001	AT2G47710.1	21798944
AT2G47710.1	Zm00001d034027_P001	AT3G58450.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17172	Sorghum	cytosol	91.81	89.2
TraesCS5B01G097600.1	Wheat	cytosol	81.87	82.84
Os12t0552500-01	Rice	cytosol, extracellular, plasma membrane, plastid	81.29	82.25
TraesCS5D01G104200.1	Wheat	cytosol	81.29	82.25
TraesCS5A01G092000.1	Wheat	cytosol	81.87	81.4
HORVU5Hr1G024160.3	Barley	cytosol	79.53	77.71
CDY27474	Canola	cytosol	28.66	76.56
GSMUA_Achr5P00180_001	Banana	cytosol	65.5	72.73
GSMUA_Achr6P20400_001	Banana	cytosol	62.57	69.48
GSMUA_Achr8P06640_001	Banana	cytosol	63.16	67.5
PGSC0003DMT400061758	Potato	cytosol	59.65	64.97
Bra000458.1-P	Field mustard	cytosol	61.4	64.81
CDY53014	Canola	cytosol	61.4	64.81
CDX95730	Canola	cytosol	61.4	64.81
CDX83322	Canola	cytosol	61.4	64.81
CDX80128	Canola	cytosol	61.4	64.81
Bra004435.1-P	Field mustard	cytosol	61.4	64.81
Solyc06g084540.2.1	Tomato	cytosol	59.06	64.33
AT2G47710.1	Thale cress	cytosol	60.82	64.2
CDY55534	Canola	cytosol	59.06	62.35
Bra021440.1-P	Field mustard	cytosol	59.06	62.35
KRH71566	Soybean	cytosol	57.31	62.03
KRG96437	Soybean	cytosol	58.48	61.35
Zm00001d041638_P001	Maize	cytosol	62.57	60.8
KRH31878	Soybean	cytosol	57.31	59.76
Solyc06g009050.2.1	Tomato	cytosol, nucleus	53.8	57.14
PGSC0003DMT400037920	Potato	cytosol	53.8	57.14
Zm00001d009118_P001	Maize	cytosol, extracellular, plasma membrane	35.09	36.36
Zm00001d034027_P001	Maize	cytosol	37.43	34.41
VIT_07s0005g00290.t01	Wine grape	cytosol	67.25	34.12
Zm00001d018135_P002	Maize	extracellular	32.16	33.95
Zm00001d025142_P001	Maize	cytosol, plastid	35.09	33.9
Zm00001d043912_P002	Maize	cytosol, plasma membrane, plastid	32.16	29.41
Zm00001d051584_P001	Maize	cytosol, extracellular	22.81	22.03

Protein Annotations

EMBL:EU965978	EnsemblPlants:Zm00001d023830_P001	EnsemblPlants:Zm00001d023830_T001	EnsemblPlantsGene:Zm00001d023830	EntrezGene:100283791	Gene3D:3.40.50.620
GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA
PANTHER:PTHR31964	PANTHER:PTHR31964:SF118	PFAM:PF00582	PRINTS:PR01438	ProteinID:AQK40183.1	SUPFAM:SSF52402
UniParc:UPI000182DCC4	UniProt:B6TLW3	MapMan:35.2	:	:	:

Description

Fiber protein Fb19

Coordinates

chr10:+:23731692..23733983

Molecular Weight (calculated)

18099.7 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.038

Length

171 amino acids

Sequence
(BLAST)

001: MAEEASAPAA GTEAPPGKMT MVVGVDESEH SFYALQWALQ HFFPPGQPQQ YRLVVVTAKP TAASAVGLAG PGAADVLPYV EADLKRSALR VVEKAKGLCT
101: QASDAVFEAL EGDARNVLCE AVERHGAEML VVGSHGYGAI KRAVLGSVSD YCAHHAHCTV MIVKKPKQHK H

Best Arabidopsis Sequence Match ( AT2G47710.1 )
(BLAST)

001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.