Factsheet for GSMUA_Achr6P20400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P08790_001
GSMUA_Achr3P25610_001
GSMUA_Achr5P00180_001
GSMUA_Achr6P20400_001
GSMUA_Achr7P10730_001
GSMUA_Achr8P06640_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47710.1	GSMUA_Achr11P...	AT2G41760.1	21798944
AT2G47710.1	GSMUA_Achr5P00180_001	AT2G47710.1	21798944
AT2G47710.1	GSMUA_Achr6P20400_001	AT2G47710.1	21798944
AT2G47710.1	GSMUA_Achr8P06640_001	AT2G47710.1	21798944
AT2G47710.1	GSMUA_Achr7P10730_001	AT3G49160.1	21798944
AT2G47710.1	GSMUA_Achr2P08790_001	AT3G58450.1	21798944
AT2G47710.1	GSMUA_Achr3P25610_001	AT3G58450.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00180_001	Banana	cytosol	86.36	86.36
CDY27474	Canola	cytosol	34.42	82.81
PGSC0003DMT400061758	Potato	cytosol	72.08	70.7
Solyc06g084540.2.1	Tomato	cytosol	70.78	69.43
GSMUA_Achr8P06640_001	Banana	cytosol	72.08	69.38
TraesCS5D01G104200.1	Wheat	cytosol	74.03	67.46
TraesCS5B01G097600.1	Wheat	cytosol	73.38	66.86
TraesCS5A01G092000.1	Wheat	cytosol	73.38	65.7
KRH71566	Soybean	cytosol	66.88	65.19
HORVU5Hr1G024160.3	Barley	cytosol	73.38	64.57
Os12t0552500-01	Rice	cytosol, extracellular, plasma membrane, plastid	70.78	64.5
Zm00001d023830_P001	Maize	cytosol, extracellular, mitochondrion	69.48	62.57
EES17172	Sorghum	cytosol	71.43	62.5
CDY53014	Canola	cytosol	65.58	62.35
KRH31878	Soybean	cytosol	66.23	62.2
CDX80128	Canola	cytosol	64.94	61.73
Bra004435.1-P	Field mustard	cytosol	64.94	61.73
PGSC0003DMT400037920	Potato	cytosol	64.29	61.49
KRG96437	Soybean	cytosol	64.94	61.35
Solyc06g009050.2.1	Tomato	cytosol, nucleus	63.64	60.87
Bra000458.1-P	Field mustard	cytosol	63.64	60.49
AT2G47710.1	Thale cress	cytosol	63.64	60.49
CDX83322	Canola	cytosol	63.64	60.49
CDX95730	Canola	cytosol	63.64	60.49
Os12t0552400-01	Rice	cytosol	61.69	59.38
Bra021440.1-P	Field mustard	cytosol	61.69	58.64
CDY55534	Canola	cytosol	61.69	58.64
Zm00001d041638_P001	Maize	cytosol	61.69	53.98
TraesCS5A01G092100.1	Wheat	cytosol	65.58	50.25
TraesCS5B01G097500.1	Wheat	cytosol	65.58	50.25
TraesCS5D01G104300.1	Wheat	cytosol	65.58	50.25
HORVU5Hr1G024170.1	Barley	cytosol	64.94	49.51
OQU79284	Sorghum	mitochondrion	59.09	48.92
GSMUA_Achr1P24830_001	Banana	cytosol	40.91	37.5
GSMUA_Achr3P29470_001	Banana	cytosol	38.31	37.34
GSMUA_Achr4P06800_001	Banana	cytosol	37.66	36.02
VIT_07s0005g00290.t01	Wine grape	cytosol	75.32	34.42
GSMUA_Achr3P25610_001	Banana	cytosol	38.31	30.89
GSMUA_Achr6P02230_001	Banana	cytosol	33.12	29.31
GSMUA_Achr2P08790_001	Banana	cytosol	35.06	29.03
GSMUA_Achr1P26770_001	Banana	cytosol	21.43	19.76

Protein Annotations

EnsemblPlants:GSMUA_Achr6P20400_001	EnsemblPlants:GSMUA_Achr6T20400_001	EnsemblPlantsGene:GSMUA_Achr6G20400_001	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF16
PFAM:PF00582	PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI000295338E	UniProt:M0T8N8	MapMan:35.2

Description

universal stress protein domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G20400_001]

Coordinates

chr6:+:14928146..14930980

Molecular Weight (calculated)

16733.1 Da

IEP (calculated)

6.851

GRAVY (calculated)

0.112

Length

154 amino acids

Sequence
(BLAST)

001: MVVGIDDSEH SFYALQWTLL HFFSPAVRPS ESYKLVIVTA KPTPTSVISV ASPGAADVLP FVESDLRKIS SQVIEKAKDI CAAHSVLDVE YEVVEGDARN
101: VLCEAVDKHH AEMLVVGSHG YGAIKRAVLG SVSDYCAHHA HCTVMIVKKP KPKH

Best Arabidopsis Sequence Match ( AT2G47710.1 )
(BLAST)

001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.