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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, extracellular, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G097600.1 Wheat cytosol 84.62 84.62
TraesCS5D01G104200.1 Wheat cytosol 84.02 84.02
TraesCS5A01G092000.1 Wheat cytosol 84.62 83.14
Zm00001d023830_P001 Maize cytosol, extracellular, mitochondrion 82.25 81.29
HORVU5Hr1G024160.3 Barley cytosol 81.66 78.86
EES17172 Sorghum cytosol 81.66 78.41
CDY27474 Canola cytosol 28.99 76.56
GSMUA_Achr5P00180_001 Banana cytosol 66.86 73.38
GSMUA_Achr6P20400_001 Banana cytosol 64.5 70.78
GSMUA_Achr8P06640_001 Banana cytosol 64.5 68.12
Os12t0552400-01 Rice cytosol 62.72 66.25
Bra000458.1-P Field mustard cytosol 62.13 64.81
CDX95730 Canola cytosol 62.13 64.81
CDX83322 Canola cytosol 62.13 64.81
Bra004435.1-P Field mustard cytosol 61.54 64.2
CDX80128 Canola cytosol 61.54 64.2
KRG96437 Soybean cytosol 61.54 63.8
PGSC0003DMT400061758 Potato cytosol 59.17 63.69
CDY53014 Canola cytosol 60.95 63.58
Solyc06g084540.2.1 Tomato cytosol 58.58 63.06
KRH71566 Soybean cytosol 57.99 62.03
AT2G47710.1 Thale cress cytosol 59.17 61.73
Bra021440.1-P Field mustard cytosol 58.58 61.11
CDY55534 Canola cytosol 58.58 61.11
KRH31878 Soybean cytosol 57.4 59.15
Os07t0673400-01 Rice cytosol 57.4 56.73
PGSC0003DMT400037920 Potato cytosol 53.25 55.9
Solyc06g009050.2.1 Tomato cytosol, nucleus 52.66 55.28
Os01t0303800-02 Rice plasma membrane 37.28 34.62
VIT_07s0005g00290.t01 Wine grape cytosol 68.05 34.12
Os10t0437500-01 Rice cytosol, plasma membrane, plastid 36.09 33.7
Os03t0305400-01 Rice plastid 34.32 32.22
Os02t0760500-01 Rice cytosol 30.77 32.1
Os01t0511100-01 Rice plastid 31.36 31.74
Protein Annotations
Gene3D:3.40.50.620MapMan:35.2EntrezGene:4352472ProteinID:ABA99526.1EMBL:AK066459ProteinID:BAF30002.1
ProteinID:BAT17578.1ProteinID:EEE53394.1GO:GO:0006950GO:GO:0008150InterPro:IPR014729EnsemblPlantsGene:Os12g0552500
EnsemblPlants:Os12t0552500-01PFAM:PF00582PRINTS:PR01438PANTHER:PTHR31964PANTHER:PTHR31964:SF16UniProt:Q2QNV2
InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF52402UniParc:UPI0000680E61InterPro:Universal_stress_UspAInterPro:UspARefSeq:XP_015620581.1
SEG:seg:::::
Description
Rossmann-like alpha/beta/alpha sandwich fold domain containing protein. (Os12t0552500-01)
Coordinates
chr12:-:22429432..22431789
Molecular Weight (calculated)
18101.7 Da
IEP (calculated)
7.008
GRAVY (calculated)
0.004
Length
169 amino acids
Sequence
(BLAST)
001: MAEEAAAASS AAEGRMTMVV GVDESEHSYY ALQWTLRHFF AAAAGQPPQY RLVVVNAKPT AASAVGLAGP GAADVLPFVE ADLKKSSMRV IEKARELCAQ
101: VSDALFEVLE GDARNVLCES VERHQAEMLV VGSHGYGAIK RAVLGSVSDY CSHHAHCTVM IVKKPKHKH
Best Arabidopsis Sequence Match ( AT2G47710.1 )
(BLAST)
001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
Arabidopsis Description
Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.