CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93447
EES17172
EES19457
OQU79284
OQU91731

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47710.1	EES19457	AT2G41760.1	21798944
AT2G47710.1	EES17172	AT2G47710.1	21798944
AT2G47710.1	OQU79284	AT2G47710.1	21798944
AT2G47710.1	EER93447	AT3G58450.1	21798944
AT2G47710.1	OQU91731	AT3G58450.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023830_P001	Maize	cytosol, extracellular, mitochondrion	89.2	91.81
TraesCS5B01G097600.1	Wheat	cytosol	81.82	85.21
TraesCS5D01G104200.1	Wheat	cytosol	81.25	84.62
TraesCS5A01G092000.1	Wheat	cytosol	81.82	83.72
Os12t0552500-01	Rice	cytosol, extracellular, plasma membrane, plastid	78.41	81.66
HORVU5Hr1G024160.3	Barley	cytosol	79.55	80.0
CDY27474	Canola	cytosol	27.84	76.56
GSMUA_Achr5P00180_001	Banana	cytosol	64.2	73.38
GSMUA_Achr6P20400_001	Banana	cytosol	62.5	71.43
GSMUA_Achr8P06640_001	Banana	cytosol	63.07	69.38
PGSC0003DMT400061758	Potato	cytosol	59.66	66.88
Bra000458.1-P	Field mustard	cytosol	61.36	66.67
CDX95730	Canola	cytosol	61.36	66.67
CDX83322	Canola	cytosol	61.36	66.67
CDY53014	Canola	cytosol	60.8	66.05
Bra004435.1-P	Field mustard	cytosol	60.8	66.05
CDX80128	Canola	cytosol	60.8	66.05
Solyc06g084540.2.1	Tomato	cytosol	58.52	65.61
AT2G47710.1	Thale cress	cytosol	59.66	64.81
KRG96437	Soybean	cytosol	57.95	62.58
KRH71566	Soybean	cytosol	55.68	62.03
Bra021440.1-P	Field mustard	cytosol	56.82	61.73
CDY55534	Canola	cytosol	56.82	61.73
KRH31878	Soybean	cytosol	55.68	59.76
Solyc06g009050.2.1	Tomato	cytosol, nucleus	52.84	57.76
PGSC0003DMT400037920	Potato	cytosol	52.84	57.76
OQU79284	Sorghum	mitochondrion	59.09	55.91
KXG31856	Sorghum	cytosol	51.14	41.1
EES00637	Sorghum	cytosol	35.8	38.18
VIT_07s0005g00290.t01	Wine grape	cytosol	66.48	34.72
EES07563	Sorghum	cytosol	31.25	33.95
OQU75645	Sorghum	cytosol, peroxisome, plastid	32.39	32.02
KXG33084	Sorghum	cytosol, peroxisome, plastid	32.39	32.02
EER92378	Sorghum	cytosol	31.82	31.82
EER93447	Sorghum	cytosol	34.66	31.61
EER92231	Sorghum	plastid	31.82	28.87
OQU91731	Sorghum	plastid	38.64	21.52
EES05648	Sorghum	cytosol	21.02	20.9

Protein Annotations

EnsemblPlants:EES17172	EnsemblPlantsGene:SORBI_3008G124400	EntrezGene:8066344	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF118
PFAM:PF00582	PRINTS:PR01438	ProteinID:EES17172	ProteinID:EES17172.1	RefSeq:XP_002443334.1	SEG:seg
SUPFAM:SSF52402	unigene:Sbi.10590	UniParc:UPI0001A8863A	UniProt:C5YPL2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr8:-:54765630..54767748

Molecular Weight (calculated)

18591.4 Da

IEP (calculated)

7.107

GRAVY (calculated)

0.046

Length

176 amino acids

Sequence
(BLAST)

001: MAEEAAAPAV AAGTEAAPPP GKMTMVVGVD ESEHSFYALQ WALQHFFPPP PQPQQYRLVV VTAKPSAASA VGLAGPGAAD VLPYVEADLK KTALRVIDKA
101: KALCAQVSDA VFEAVEGDAR SVLCEAVERH HAEMLVVGSH GYGAIKRAVL GSVSDYCAHH AHCTVMIVKK PKHHKH

Best Arabidopsis Sequence Match ( AT2G47710.1 )
(BLAST)

001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.