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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plastid 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU75645 Sorghum cytosol, peroxisome, plastid 100.0 100.0
Zm00001d043912_P002 Maize cytosol, plasma membrane, plastid 87.64 83.42
Os01t0511100-01 Rice plastid 73.03 77.84
TraesCS2A01G502200.1 Wheat cytosol, plastid 60.67 65.85
TraesCS2D01G502700.1 Wheat cytosol, plastid 59.55 64.63
TraesCS2B01G530300.1 Wheat cytosol, plastid 59.55 64.63
GSMUA_Achr3P29470_001 Banana cytosol 51.12 57.59
GSMUA_Achr4P06800_001 Banana cytosol 51.12 56.52
HORVU2Hr1G111600.2 Barley cytosol 60.67 49.54
AT1G68300.1 Thale cress cytosol, peroxisome, plastid 43.82 48.75
VIT_01s0011g03690.t01 Wine grape cytosol 42.7 46.34
VIT_01s0011g03680.t01 Wine grape cytosol 42.7 44.71
CDY01904 Canola cytosol, peroxisome, plastid 39.89 44.65
CDX96035 Canola cytosol, peroxisome, plastid 39.33 44.03
EES07563 Sorghum cytosol 39.89 43.83
EES00637 Sorghum cytosol 35.96 38.79
Bra004295.1-P Field mustard cytosol, peroxisome, plastid 41.01 36.87
EER92231 Sorghum plastid 35.39 32.47
EES17172 Sorghum cytosol 32.02 32.39
EER93447 Sorghum cytosol 34.27 31.61
EER92378 Sorghum cytosol 28.09 28.41
EES05648 Sorghum cytosol 27.53 27.68
OQU79284 Sorghum mitochondrion 26.97 25.81
KXG31856 Sorghum cytosol 31.46 25.57
OQU91731 Sorghum plastid 33.71 18.99
Protein Annotations
Gene3D:3.40.50.620MapMan:35.2EntrezGene:8155339UniProt:C6JS90ProteinID:EES20266.1GO:GO:0006950
GO:GO:0008150InterPro:IPR014729ProteinID:KXG18764.1EnsemblPlants:KXG33084ProteinID:KXG33084ProteinID:KXG33084.1
ProteinID:OQU75645.1PFAM:PF00582PRINTS:PR01438PANTHER:PTHR31964PANTHER:PTHR31964:SF6InterPro:Rossmann-like_a/b/a_fold
EnsemblPlantsGene:SORBI_3003G252300SUPFAM:SSF52402unigene:Sbi.1611UniParc:UPI0001AFF772InterPro:Universal_stress_UspAInterPro:UspA
RefSeq:XP_002489071.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr3:-:59081410..59083793
Molecular Weight (calculated)
19079.3 Da
IEP (calculated)
6.787
GRAVY (calculated)
0.054
Length
178 amino acids
Sequence
(BLAST)
001: MAAPAPHQGQ GQQGDHHQPK LQKVMVAVDE SECSGHALEW VLRNLAPTLA PPLLVLTVQP HFPLGYVSAA AFGAPLGTVP PVAPELIKSM QEQQRQLTQA
101: LLDKVVAICA EHGVAVETIV EVGDAKEMIC EAAEMKNVDL LVLGSHSRGP IQRLFLGSVS NYCVHHSKRP VLVVKNQG
Best Arabidopsis Sequence Match ( AT1G68300.1 )
(BLAST)
001: MAEEEKSVMK QVMVAIDESE CSKRALQWTL VYLKDSLADS DIILFTAQPH LDLSCVYASS YGAAPIELIN SLQESHKNAG LNRLDEGTKI CAETGVTPRK
101: VLEFGNPKEA ICEAAEKLGV DMLVVGSHGK GALQRTFLGS VSNYCVNNAK CPVLVVRTKA
Arabidopsis Description
Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C9G5]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.