CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99222
EES02604
KXG26935

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41760.1	EER99222	AT3G61150.1	21798944
AT2G41760.1	EES02604	AT3G61150.1	21798944
AT2G41760.1	KXG26935	AT3G61150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038071_P002	Maize	cytosol, plastid	90.53	84.29
Os05t0387900-01	Rice	cytosol	70.78	74.46
TraesCS1B01G253700.1	Wheat	cytosol	70.37	71.55
TraesCS1A01G242200.1	Wheat	cytosol	71.19	71.49
TraesCS1D01G242100.1	Wheat	cytosol	69.14	70.29
KRH33079	Soybean	cytosol	48.97	54.34
VIT_08s0007g08710.t01	Wine grape	cytosol	47.33	53.0
GSMUA_Achr11P...	Banana	cytosol	53.5	52.21
PGSC0003DMT400070177	Potato	cytosol	48.56	51.53
Solyc04g015760.2.1	Tomato	cytosol	47.74	50.88
AT2G41760.1	Thale cress	cytosol	44.86	49.32
Bra000239.1-P	Field mustard	cytosol	41.56	47.2
CDY22539	Canola	cytosol	44.44	46.96
CDY35400	Canola	cytosol	44.86	46.19

Protein Annotations

EnsemblPlants:EES19457	EnsemblPlantsGene:SORBI_3009G123600	EntrezGene:8076839	Gene3D:3.10.620.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016811	InterPro:IPR037132	InterPro:N_Gln_amidohydro_ab_roll_sf	InterPro:Prot_N_Gln_amidohydro_ab_roll	PANTHER:PTHR13035
PFAM:PF09764	ProteinID:EES19457	ProteinID:EES19457.1	RefSeq:XP_002441027.1	unigene:Sbi.10505	UniParc:UPI0001A892AD
UniProt:C5YXF5	MapMan:19.2.1.2.1.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:47593388..47598066

Molecular Weight (calculated)

27123.9 Da

IEP (calculated)

4.624

GRAVY (calculated)

-0.243

Length

243 amino acids

Sequence
(BLAST)

001: MDGGRAAAVG GDPSPIAAPT NPSALSSRPV DVSSFTHTPC YCEENVYMLC KELIRTGVAD PAGTDLYVVF ISNEEKKVPL WHQKAGHSDN GFICWDYHVI
101: CIQSRRSKGE VLDFVWDLDS DLPFPSPFIQ YVSDAIQPLS FSNSRYARLF RVIHAPVFLR SFASDRSHMK DPEGNWIQLP PKYEPVVAED GTTNNLNEYI
201: MMSVEDVADV ESMANDVYYN KHGVVLNETI LPKFFAQLPG PDT

Best Arabidopsis Sequence Match ( AT2G41760.1 )
(BLAST)

001: MSGVTSEPIA MDATRFQHTP YYCEENVYLL CKTLCENGVA EATCSDLFVV FISNEKKQVP LWHQKASTRA DGVVLWDYHV ICVQRKKESD SEPLVWDLDS
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P

Arabidopsis Description

Protein N-terminal glutamine amidohydrolase [Source:UniProtKB/Swiss-Prot;Acc:O22944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.