Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41760.1 | KRH00641 | AT3G61150.1 | 21798944 |
| AT2G41760.1 | KRH40539 | AT3G61150.1 | 21798944 |
| AT2G41760.1 | KRH48236 | AT3G61150.1 | 21798944 |
| AT2G41760.1 | KRH65144 | AT3G61150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g08710.t01 | Wine grape | cytosol | 65.75 | 66.36 |
| PGSC0003DMT400070177 | Potato | cytosol | 62.1 | 59.39 |
| AT2G41760.1 | Thale cress | cytosol | 59.82 | 59.28 |
| Solyc04g015760.2.1 | Tomato | cytosol | 59.82 | 57.46 |
| Bra000239.1-P | Field mustard | cytosol | 54.34 | 55.61 |
| CDY22539 | Canola | cytosol | 57.53 | 54.78 |
| CDY35400 | Canola | cytosol | 57.99 | 53.81 |
| Os05t0387900-01 | Rice | cytosol | 55.25 | 52.38 |
| TraesCS1B01G253700.1 | Wheat | cytosol | 55.71 | 51.05 |
| TraesCS1A01G242200.1 | Wheat | cytosol | 55.25 | 50.0 |
| TraesCS1D01G242100.1 | Wheat | cytosol | 54.34 | 49.79 |
| EES19457 | Sorghum | cytosol, plastid | 54.34 | 48.97 |
| GSMUA_Achr11P... | Banana | cytosol | 55.25 | 48.59 |
| Zm00001d038071_P002 | Maize | cytosol, plastid | 54.34 | 45.59 |
Protein Annotations
| EMBL:ACUP02006310 | EMBL:BT098639 | EnsemblPlants:KRH33079 | EnsemblPlantsGene:GLYMA_10G097900 | EntrezGene:100806607 | Gene3D:3.10.620.10 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 | GO:GO:0016811 | InterPro:IPR037132 | InterPro:N_Gln_amidohydro_ab_roll_sf |
| InterPro:Prot_N_Gln_amidohydro_ab_roll | PANTHER:PTHR13035 | PFAM:PF09764 | ProteinID:KRH33079 | ProteinID:KRH33079.1 | UniParc:UPI0001B170A7 |
| UniProt:C6TLQ0 | MapMan:19.2.1.2.1.3 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:16712846..16719554
Molecular Weight (calculated)
24861.6 Da
IEP (calculated)
5.504
GRAVY (calculated)
-0.161
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSTMDILH FHHTPFYCEE NVYLLCKKLC NDGIANADGS DLFVAFISNE KKQIPLWNQK ASKRADGVIL WDYHVICIQI KQGAVPPLVW DLDSTLPFPS
101: PLPSYVSETI RPSFQLFSDY NRLFRVVHAP LFLRCFASDR RHMKDSGGNW IEEPPQHEPI VAEDRTVHNL NEYINISAAD AITDVTISSV KDAISTQTHG
201: VVIKENQLEE FICQLSSLQ
101: PLPSYVSETI RPSFQLFSDY NRLFRVVHAP LFLRCFASDR RHMKDSGGNW IEEPPQHEPI VAEDRTVHNL NEYINISAAD AITDVTISSV KDAISTQTHG
201: VVIKENQLEE FICQLSSLQ
001: MSGVTSEPIA MDATRFQHTP YYCEENVYLL CKTLCENGVA EATCSDLFVV FISNEKKQVP LWHQKASTRA DGVVLWDYHV ICVQRKKESD SEPLVWDLDS
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P
Arabidopsis Description
Protein N-terminal glutamine amidohydrolase [Source:UniProtKB/Swiss-Prot;Acc:O22944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.